RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 SOWAHDA6NJG2 315 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 LRRC53A6NM62 1247 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 USP27XA6NNY8 438 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 ARHGAP6O43182 974 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 N4BP1O75113 896 aaKnown RBP11.28□□□□□ -0.6
VPS4B-204ENST00000589604 ZNF623O75123 536 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 GJB5O95377 273 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 VNN1O95497 513 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 AMHP03971 560 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 DLATP10515 647 aaKnown RBP11.28□□□□□ -0.6
VPS4B-204ENST00000589604 MXI1P50539 228 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 CDK17Q00537 523 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 ZACNQ401N2 412 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 HGSNATQ68CP4 663 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 LMBRD2Q68DH5 695 aaPredicted RBP11.28□□□□□ -0.6
VPS4B-204ENST00000589604 KRT39Q6A163 491 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 IQCEQ6IPM2 695 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 PHLDB3Q6NSJ2 640 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 RRAGAQ7L523 313 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 PARP9Q8IXQ6 854 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 THNSL1Q8IYQ7 743 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 RNF169Q8NCN4 708 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 OR5B17Q8NGF7 314 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 TAS1R2Q8TE23 839 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 CGRRF1Q99675 332 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 GPR88Q9GZN0 384 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 C1orf112Q9NSG2 853 aa11.28□□□□□ -0.6
VPS4B-204ENST00000589604 FNDC1Q4ZHG4 1894 aaPredicted RBP11.28□□□□□ -0.6
VPS4B-204ENST00000589604 GPR37O15354 613 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 B4GALT3O60512 393 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 EFCAB14O75071 495 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 DGKIO75912 1065 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 AKAP5P24588 427 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 HSP90AA2PQ14568 343 aaPredicted RBP11.27□□□□□ -0.6
VPS4B-204ENST00000589604 TDRD10Q5VZ19 366 aaKnown RBP11.27□□□□□ -0.6
VPS4B-204ENST00000589604 TOGARAM2Q6ZUX3 1019 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 NPAS4Q8IUM7 802 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 TMTC1Q8IUR5 882 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 ARHGEF19Q8IW93 802 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 TMEM130Q8N3G9 435 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 ZNF397Q8NF99 534 aaPredicted RBP11.27□□□□□ -0.6
VPS4B-204ENST00000589604 SYN2Q92777 582 aaPredicted RBP11.27□□□□□ -0.6
VPS4B-204ENST00000589604 ZNF689Q96CS4 500 aaPredicted RBP11.27□□□□□ -0.6
VPS4B-204ENST00000589604 TMEM161AQ9NX61 479 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 AIPL1Q9NZN9 384 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 ARHGAP20Q9P2F6 1191 aa11.27□□□□□ -0.6
VPS4B-204ENST00000589604 PLEKP08567 350 aaPredicted RBP11.27□□□□□ -0.61
VPS4B-204ENST00000589604 LINC00271P0C7V0 271 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 STAG3L1P0CL83 205 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 MSNP26038 577 aaKnown RBP11.27□□□□□ -0.61
VPS4B-204ENST00000589604 OSTNP61366 133 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 HTRA4P83105 476 aaPredicted RBP11.27□□□□□ -0.61
VPS4B-204ENST00000589604 POU5F1Q01860 360 aaKnown RBP11.27□□□□□ -0.61
VPS4B-204ENST00000589604 SLC10A6Q3KNW5 377 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 CYP26C1Q6V0L0 522 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 IRF2BP2Q7Z5L9 587 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 EFCAB13Q8IY85 973 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 CCAR2Q8N163 923 aaKnown RBP11.27□□□□□ -0.61
VPS4B-204ENST00000589604 PHOSPHO2Q8TCD6 241 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 DDX27Q96GQ7 796 aaKnown RBP11.27□□□□□ -0.61
VPS4B-204ENST00000589604 ZFP42Q96MM3 310 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 CASD1Q96PB1 797 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 SLC9A7Q96T83 725 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 APOL6Q9BWW8 343 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 PBX4Q9BYU1 374 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 ELAC1Q9H777 363 aaKnown RBP11.27□□□□□ -0.61
VPS4B-204ENST00000589604 MIOSQ9NXC5 875 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 SNTG2Q9NY99 539 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 APEX2Q9UBZ4 518 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 MYO6Q9UM54 1294 aa11.27□□□□□ -0.61
VPS4B-204ENST00000589604 REV3LO60673 3130 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 CLTAP09496 248 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 CXCL8P10145 99 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 TNNI1P19237 187 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 NCBP1Q09161 790 aaKnown RBP11.26□□□□□ -0.61
VPS4B-204ENST00000589604 ASTE1Q2TB18 679 aaPredicted RBP11.26□□□□□ -0.61
VPS4B-204ENST00000589604 PAN2Q504Q3 1202 aaKnown RBP11.26□□□□□ -0.61
VPS4B-204ENST00000589604 CACNA2D4Q7Z3S7 1137 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 USP37Q86T82 979 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 WDR49Q8IV35 697 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 REXO1L1PQ8IX06 675 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 GSTCDQ8NEC7 633 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 FBXL13Q8NEE6 735 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 OLIG1Q8TAK6 271 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 HELQQ8TDG4 1101 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 ELMO3Q96BJ8 720 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 KREMEN1Q96MU8 473 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 FNBP1Q96RU3 617 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 KIAA1671Q9BY89 1806 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 MTIF3Q9H2K0 278 aaKnown RBP11.26□□□□□ -0.61
VPS4B-204ENST00000589604 RAB20Q9NX57 234 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 KLK14Q9P0G3 267 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 DNAJC12Q9UKB3 198 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 REXO2Q9Y3B8 237 aaKnown RBP11.26□□□□□ -0.61
VPS4B-204ENST00000589604 DAAM1Q9Y4D1 1078 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 PCDHB7Q9Y5E2 793 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 ADGRG1Q9Y653 693 aa11.26□□□□□ -0.61
VPS4B-204ENST00000589604 SCN1AP35498 2009 aa11.25□□□□□ -0.61
VPS4B-204ENST00000589604 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.25□□□□□ -0.61
VPS4B-204ENST00000589604 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms