RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	COL20A1	Q9P218	1284 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	CLEC11A	Q9Y240	323 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	POLR2A	P24928	1970 aa	Known RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	PDXK	O00764	312 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	CALU	O43852	315 aa	Predicted RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	ZBED4	O75132	1171 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	PSMD10	O75832	226 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	ICAM1	P05362	532 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	FGFR4	P22455	802 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	SFSWAP	Q12872	951 aa	Known RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	LRRC14	Q15048	493 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	KIAA1614	Q5VZ46	1190 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	TMC3	Q7Z5M5	1100 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	STON2	Q8WXE9	905 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	LPAR1	Q92633	364 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	ALG3	Q92685	438 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	KRT35	Q92764	455 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	SYN2	Q92777	582 aa	Predicted RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	KAT5	Q92993	513 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	PLCB1	Q9NQ66	1216 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	RNF14	Q9UBS8	474 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	DNAJC12	Q9UKB3	198 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	GTPBP10	A4D1E9	387 aa	Known RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	GAS7	O60861	476 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	RPSA	P08865	295 aa	Known RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	CSE1L	P55060	971 aa	Known RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	RPS6	P62753	249 aa	Known RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	CDCA2	Q69YH5	1023 aa	Predicted RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	SNRNP48	Q6IEG0	339 aa	Known RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	DAW1	Q8N136	415 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	OTUD5	Q96G74	571 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	SEC16B	Q96JE7	1060 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	ZNF577	Q9BSK1	485 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	SLC40A1	Q9NP59	571 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	UTP11	Q9Y3A2	253 aa	Known RBP	12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	C2CD2	Q9Y426	696 aa		12.35	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	ZNF536	O15090	1300 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	COL2A1	P02458	1487 aa	Predicted RBP	12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	TCRBV7S2A1N4T	A0A589	114 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	JAM2	P57087	298 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	PPP2R2A	P63151	447 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	CEP55	Q53EZ4	464 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	MILR1	Q7Z6M3	343 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	C11orf74	Q86VG3	221 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	FBXO25	Q8TCJ0	367 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	FAM20A	Q96MK3	541 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	WDR11	Q9BZH6	1224 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	GPR88	Q9GZN0	384 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	ELP3	Q9H9T3	547 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	GPRC5C	Q9NQ84	441 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	SLC12A6	Q9UHW9	1150 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	DBR1	Q9UK59	544 aa	Known RBP	12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	AMFR	Q9UKV5	643 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	COG5	Q9UP83	839 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	PPP1R12B	O60237	982 aa	Predicted RBP	12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	BPNT1	O95861	308 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	ZBTB48	P10074	688 aa	Predicted RBP	12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	CIITA	P33076	1130 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	STAT1	P42224	750 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	VGLL4	Q14135	290 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	FAM133B	Q5BKY9	247 aa	Known RBP	12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	TAS1R3	Q7RTX0	852 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	CLMN	Q96JQ2	1002 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	TAAR1	Q96RJ0	339 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	LXN	Q9BS40	222 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	AZI2	Q9H6S1	392 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	ADARB2	Q9NS39	739 aa	Known RBP	12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	KLC4	Q9NSK0	619 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	TELO2	Q9Y4R8	837 aa		12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	MAGED1	Q9Y5V3	778 aa	Predicted RBP	12.34	□□□□□ -0.43
CDK5RAP3-231	ENST00000584063	GOLGA8IP	A6NC78	632 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	GOLGA8J	A6NMD2	632 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	VWA5A	O00534	786 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	CYP3A4	P08684	503 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	BTF3	P20290	206 aa	Known RBP	12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	MESD	Q14696	234 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	MOXD1	Q6UVY6	613 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	GADL1	Q6ZQY3	521 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	FAM178B	Q8IXR5	827 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	MREG	Q8N565	214 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	12.33	□□□□□ -0.44	4e-10	■□□□□ 9.4
CDK5RAP3-231	ENST00000584063	LRRC45	Q96CN5	670 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	PBK	Q96KB5	322 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	FMO2	Q99518	471 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	FAM118B	Q9BPY3	351 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	SEMA4A	Q9H3S1	761 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	SLC38A10	Q9HBR0	1119 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	CSAD	Q9Y600	493 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	FOXN3	O00409	490 aa	Predicted RBP	12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	USP2	O75604	605 aa	Predicted RBP	12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	ATXN8OS	P0DMR3	200 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	COL6A1	P12109	1028 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	ITGB5	P18084	799 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	FMO5	P49326	533 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	SOX10	P56693	466 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	BAAT	Q14032	418 aa	Predicted RBP	12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	SLC29A2	Q14542	456 aa		12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	TRIP13	Q15645	432 aa	Predicted RBP	12.33	□□□□□ -0.44
CDK5RAP3-231	ENST00000584063	C2CD6	Q53TS8	623 aa		12.33	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms