RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 HS3ST4Q9Y661 456 aa8.18□□□□□ -1.1
SS18-214ENST00000580003 CENPVL1A0A0U1RR11 272 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 F2RL2O00254 374 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 LPXNO60711 386 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 ERN1O75460 977 aaKnown RBP8.17□□□□□ -1.1
SS18-214ENST00000580003 FTH1P19P0C7X4 201 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 FXR1P51114 621 aaKnown RBP eCLIP8.17□□□□□ -1.1
SS18-214ENST00000580003 KLF10Q13118 480 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 NOGQ13253 232 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 FLYWCH1Q4VC44 716 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 ZNF365Q70YC5 407 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 GRAMD1CQ8IYS0 662 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 LARP4BQ92615 738 aaKnown RBP8.17□□□□□ -1.1
SS18-214ENST00000580003 HPS3Q969F9 1004 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 RNF31Q96EP0 1072 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 MLST8Q9BVC4 326 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 SIDT1Q9NXL6 827 aaKnown RBP8.17□□□□□ -1.1
SS18-214ENST00000580003 ANKFY1Q9P2R3 1169 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 USP25Q9UHP3 1055 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 AATKQ6ZMQ8 1374 aa8.17□□□□□ -1.1
SS18-214ENST00000580003 RFPL1O75677 317 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 CDKL5O76039 1030 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 GNAI3P08754 354 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 HSPA6P17066 643 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 MAP2K6P52564 334 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 HK3P52790 923 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 GNAI1P63096 354 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 HEATR3Q7Z4Q2 680 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 ARHGEF19Q8IW93 802 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 FAM43AQ8N2R8 423 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 JDP2Q8WYK2 163 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 MED15Q96RN5 788 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 ALOXE3Q9BYJ1 711 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 PCED1AQ9H1Q7 454 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 WDCPQ9H6R7 721 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 NMRK2Q9NPI5 230 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 LMBRD1Q9NUN5 540 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 ABCF2Q9UG63 623 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 TCEAL9Q9UHQ7 104 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 FEZ2Q9UHY8 353 aaPredicted RBP8.16□□□□□ -1.1
SS18-214ENST00000580003 KCNE5Q9UJ90 142 aa8.16□□□□□ -1.1
SS18-214ENST00000580003 UNC119BA6NIH7 251 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 MARCH11A6NNE9 402 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 PPM1GO15355 546 aaPredicted RBP8.15□□□□□ -1.1
SS18-214ENST00000580003 AP1G1O43747 822 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 FOSP01100 380 aaPredicted RBP8.15□□□□□ -1.1
SS18-214ENST00000580003 ELANEP08246 267 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 SLFN5Q08AF3 891 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 CCDC93Q567U6 631 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 ATAT1Q5SQI0 421 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 TPH2Q8IWU9 490 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 AMER2Q8N7J2 671 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 C1GALT1C1Q96EU7 318 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 FAM167AQ96KS9 214 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 LRGUKQ96M69 825 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 AIFM3Q96NN9 605 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 BRD9Q9H8M2 597 aa8.15□□□□□ -1.1
SS18-214ENST00000580003 TMEM191CA6NGB0 347 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 NT5C1B-RDH14C9J2C7 533 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 ANXA1P04083 346 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 FCER1AP12319 257 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 CXADRP78310 365 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 B3GNTL1Q67FW5 361 aaPredicted RBP8.14□□□□□ -1.11
SS18-214ENST00000580003 RAVER1Q8IY67 606 aaKnown RBP8.14□□□□□ -1.11
SS18-214ENST00000580003 ULK2Q8IYT8 1036 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 BOD1Q96IK1 185 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 PRRX2Q99811 253 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 ADAM2Q99965 735 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 GALNT9Q9HCQ5 603 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 SLAMF7Q9NQ25 335 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 CFAP97Q9P2B7 532 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 DKK2Q9UBU2 259 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 ING1Q9UK53 422 aaPredicted RBP8.14□□□□□ -1.11
SS18-214ENST00000580003 G3BP2Q9UN86 482 aaKnown RBP8.14□□□□□ -1.11
SS18-214ENST00000580003 CDYLQ9Y232 598 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 EID1Q9Y6B2 187 aa8.14□□□□□ -1.11
SS18-214ENST00000580003 U2AF1L5P0DN76 240 aaPredicted RBP8.13□□□□□ -1.11
SS18-214ENST00000580003 U2AF1Q01081 240 aaKnown RBP eCLIP8.13□□□□□ -1.11
SS18-214ENST00000580003 ZNF844Q08AG5 666 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 TP53BP2Q13625 1128 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 GTF2H3Q13889 308 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 ZNF267Q14586 743 aaPredicted RBP8.13□□□□□ -1.11
SS18-214ENST00000580003 PPP2R5AQ15172 486 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 ZNF627Q7L945 461 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 CHPFQ8IZ52 775 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 LCORLQ8N3X6 602 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 SH2D3CQ8N5H7 860 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 CAMKK1Q8N5S9 505 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 SLC17A8Q8NDX2 589 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 CDK5RAP3Q96JB5 506 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 SORCS2Q96PQ0 1159 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 WDR11Q9BZH6 1224 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 IMPG2Q9BZV3 1241 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 SLC12A5Q9H2X9 1139 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 SERHL2Q9H4I8 314 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 CYP4F11Q9HBI6 524 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 PNPOQ9NVS9 261 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 HSFX1Q9UBD0 423 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 SLC45A2Q9UMX9 530 aa8.13□□□□□ -1.11
SS18-214ENST00000580003 CCDC78A2IDD5 438 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms