RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 PRCPP42785 496 aa17.12■□□□□ 0.33
CHD3-215ENST00000572750 BRCC3P46736 316 aa17.12■□□□□ 0.33
CHD3-215ENST00000572750 RBM10P98175 930 aaKnown RBP17.12■□□□□ 0.33
CHD3-215ENST00000572750 TFAMQ00059 246 aaKnown RBP17.12■□□□□ 0.33
CHD3-215ENST00000572750 POU5F1Q01860 360 aaKnown RBP17.12■□□□□ 0.33
CHD3-215ENST00000572750 RTP2Q5QGT7 225 aa17.12■□□□□ 0.33
CHD3-215ENST00000572750 FAM171A1Q5VUB5 890 aa17.12■□□□□ 0.33
CHD3-215ENST00000572750 SPATA1Q5VX52 437 aa17.12■□□□□ 0.33
CHD3-215ENST00000572750 LMBRD2Q68DH5 695 aaPredicted RBP17.12■□□□□ 0.33
CHD3-215ENST00000572750 MRPL43Q8N983 215 aaKnown RBP17.12■□□□□ 0.33
CHD3-215ENST00000572750 DDX27Q96GQ7 796 aaKnown RBP17.12■□□□□ 0.33
CHD3-215ENST00000572750 KCNH6Q9H252 994 aa17.12■□□□□ 0.33
CHD3-215ENST00000572750 SCN1AP35498 2009 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 VPS13AQ96RL7 3174 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 ZNF233A6NK53 670 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 GOLGA6L22H0YM25 854 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 CALUO43852 315 aaPredicted RBP17.11■□□□□ 0.33
CHD3-215ENST00000572750 EXOC3O60645 756 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 DSG1Q02413 1049 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 CYP24A1Q07973 514 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 BMS1Q14692 1282 aaKnown RBP17.11■□□□□ 0.33
CHD3-215ENST00000572750 DUSP6Q16828 381 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 USP41Q3LFD5 358 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 ZCWPW2Q504Y3 356 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 KIAA1841Q6NSI8 718 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 EP400NLQ6ZTU2 488 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 HFE2Q6ZVN8 426 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 CEP57Q86XR8 500 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 VN1R2Q8NFZ6 395 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 GPT2Q8TD30 523 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 TSPAN18Q96SJ8 248 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 MTMR12Q9C0I1 747 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 CLSTN2Q9H4D0 955 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 KIAA1586Q9HCI6 787 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 MRPL17Q9NRX2 175 aaKnown RBP17.11■□□□□ 0.33
CHD3-215ENST00000572750 CHST7Q9NS84 486 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 CLDND1Q9NY35 253 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 NUB1Q9Y5A7 615 aa17.11■□□□□ 0.33
CHD3-215ENST00000572750 TBX10O75333 385 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 GLP2RO95838 553 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 BMP6P22004 513 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 NR2F2P24468 414 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 TKTP29401 623 aaKnown RBP17.1■□□□□ 0.33
CHD3-215ENST00000572750 MCM4P33991 863 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 ELAVL2Q12926 359 aaKnown RBP17.1■□□□□ 0.33
CHD3-215ENST00000572750 COL19A1Q14993 1142 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 C9orf57Q5W0N0 161 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 LLGL2Q6P1M3 1020 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 PRSS55Q6UWB4 352 aaPredicted RBP17.1■□□□□ 0.33
CHD3-215ENST00000572750 RIN2Q8WYP3 895 aaPredicted RBP17.1■□□□□ 0.33
CHD3-215ENST00000572750 CCDC127Q96BQ5 260 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 PABPC5Q96DU9 382 aaKnown RBP17.1■□□□□ 0.33
CHD3-215ENST00000572750 TTPALQ9BTX7 342 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 UBE2ZQ9H832 354 aaPredicted RBP17.1■□□□□ 0.33
CHD3-215ENST00000572750 DPP3Q9NY33 737 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 TRAF3IP3Q9Y228 551 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.1■□□□□ 0.33
CHD3-215ENST00000572750 IRAK3Q9Y616 596 aa17.1■□□□□ 0.33
CHD3-215ENST00000572750 LILRB3O75022 631 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 CLASP2O75122 1294 aaKnown RBP17.09■□□□□ 0.33
CHD3-215ENST00000572750 ITGB3P05106 788 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 CNPP09543 421 aaKnown RBP17.09■□□□□ 0.33
CHD3-215ENST00000572750 DLATP10515 647 aaKnown RBP17.09■□□□□ 0.33
CHD3-215ENST00000572750 ALADP13716 330 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 RPL17P18621 184 aaKnown RBP17.09■□□□□ 0.33
CHD3-215ENST00000572750 KCNA5P22460 613 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 CASP4P49662 377 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 DLX2Q07687 328 aaPredicted RBP17.09■□□□□ 0.33
CHD3-215ENST00000572750 MORC3Q14149 939 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 LEXMQ3ZCV2 418 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 COBLL1Q53SF7 1204 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 KIAA0319Q5VV43 1072 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 CEP135Q66GS9 1140 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.09■□□□□ 0.33
CHD3-215ENST00000572750 NT5DC4Q86YG4 428 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 SLC9A9Q8IVB4 645 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 EFHBQ8N7U6 833 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 OR5B17Q8NGF7 314 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 GZF1Q9H116 711 aaPredicted RBP17.09■□□□□ 0.33
CHD3-215ENST00000572750 NUP62CLQ9H1M0 184 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 DMAC2Q9NW81 257 aa17.09■□□□□ 0.33
CHD3-215ENST00000572750 BARX2Q9UMQ3 279 aaPredicted RBP17.09■□□□□ 0.33
CHD3-215ENST00000572750 ANO9A1A5B4 782 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 TRIM49BA6NDI0 452 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 H3BQ06 376 aaPredicted RBP17.08■□□□□ 0.32
CHD3-215ENST00000572750 TEX28O15482 410 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 TRAPPC3O43617 180 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 TMEM191BP0C7N4 346 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 CD44P16070 742 aaKnown RBP17.08■□□□□ 0.32
CHD3-215ENST00000572750 FGFR3P22607 806 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 POLR2BP30876 1174 aaKnown RBP17.08■□□□□ 0.32
CHD3-215ENST00000572750 SSTR3P32745 418 aaPredicted RBP17.08■□□□□ 0.32
CHD3-215ENST00000572750 NDUFV1P49821 464 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 PMS1P54277 932 aaKnown RBP17.08■□□□□ 0.32
CHD3-215ENST00000572750 PSMD6Q15008 389 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 CTC1Q2NKJ3 1217 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 SCARA3Q6AZY7 606 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 WDR49Q8IV35 697 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 GLYCTKQ8IVS8 523 aa17.08■□□□□ 0.32
CHD3-215ENST00000572750 ADSSL1Q8N142 457 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms