RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 COLGALT2Q8IYK4 626 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 COLGALT1Q8NBJ5 622 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 SAAL1Q96ER3 474 aa22.31■■□□□ 1.16
VPS53-210ENST00000571456 PPP1R3GB7ZBB8 358 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 CETN3O15182 167 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 ZC3H11AO75152 810 aaKnown RBP eCLIP22.3■■□□□ 1.16
VPS53-210ENST00000571456 BMP6P22004 513 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 RPL9P32969 192 aaKnown RBP22.3■■□□□ 1.16
VPS53-210ENST00000571456 CYP2J2P51589 502 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 PLCB3Q01970 1234 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 PAK1Q13153 545 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 SEZ6Q53EL9 994 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 SASS6Q6UVJ0 657 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 CACTINQ8WUQ7 758 aaKnown RBP22.3■■□□□ 1.16
VPS53-210ENST00000571456 PPP2R3CQ969Q6 453 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 COLEC11Q9BWP8 271 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 MIOSQ9NXC5 875 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 SPG21Q9NZD8 308 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 CLEC1BQ9P126 229 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 LZTS1Q9Y250 596 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 FAN1Q9Y2M0 1017 aa22.3■■□□□ 1.16
VPS53-210ENST00000571456 EP300Q09472 2414 aaPredicted RBP22.3■■□□□ 1.16
VPS53-210ENST00000571456 TPRP12270 2363 aaKnown RBP22.3■■□□□ 1.16
VPS53-210ENST00000571456 LACTBL1A8MY62 500 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 GALR2O43603 387 aaPredicted RBP22.29■■□□□ 1.16
VPS53-210ENST00000571456 CSPG5O95196 566 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 FGFR1OPO95684 399 aaKnown RBP22.29■■□□□ 1.16
VPS53-210ENST00000571456 GALTP07902 379 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 NBL1P41271 181 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 AP3M2P53677 418 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 BCAR1P56945 870 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 KRT17Q04695 432 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 ADAM9Q13443 819 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 TMEM132DQ14C87 1099 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 NAB2Q15742 525 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 ZBTB6Q15916 424 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 ZBTB41Q5SVQ8 909 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 ISM2Q6H9L7 571 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 PHF7Q9BWX1 381 aaPredicted RBP22.29■■□□□ 1.16
VPS53-210ENST00000571456 DMXL1Q9Y485 3027 aa22.29■■□□□ 1.16
VPS53-210ENST00000571456 DDHD2O94830 711 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 ERCC5P28715 1186 aaPredicted RBP22.28■■□□□ 1.16
VPS53-210ENST00000571456 PSMC2P35998 433 aaKnown RBP22.28■■□□□ 1.16
VPS53-210ENST00000571456 AFF1P51825 1210 aaKnown RBP22.28■■□□□ 1.16
VPS53-210ENST00000571456 INTS8Q75QN2 995 aaKnown RBP22.28■■□□□ 1.16
VPS53-210ENST00000571456 ZNF280BQ86YH2 543 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 ZC3H3Q8IXZ2 948 aaKnown RBP22.28■■□□□ 1.16
VPS53-210ENST00000571456 BEST2Q8NFU1 509 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 NELFBQ8WX92 580 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 KIF12Q96FN5 646 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 TMEM169Q96HH4 297 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 CEP63Q96MT8 703 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 FNBP1Q96RU3 617 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 ANO10Q9NW15 660 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 TMEM63CQ9P1W3 806 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 PUF60Q9UHX1 559 aaKnown RBP22.28■■□□□ 1.16
VPS53-210ENST00000571456 RWDD2AQ9UIY3 292 aa22.28■■□□□ 1.16
VPS53-210ENST00000571456 USP15Q9Y4E8 981 aaPredicted RBP22.28■■□□□ 1.16
VPS53-210ENST00000571456 GOLGA8IPA6NC78 632 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 GOLGA8JA6NMD2 632 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 TMEM189-UBE2V1I3L0A0 370 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 SLC16A3O15427 465 aaKnown RBP22.27■■□□□ 1.16
VPS53-210ENST00000571456 CYP24A1Q07973 514 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 ELAVL2Q12926 359 aaKnown RBP22.27■■□□□ 1.16
VPS53-210ENST00000571456 BMS1Q14692 1282 aaKnown RBP22.27■■□□□ 1.16
VPS53-210ENST00000571456 PSMD6Q15008 389 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 CAVIN1Q6NZI2 390 aaKnown RBP22.27■■□□□ 1.16
VPS53-210ENST00000571456 DCLRE1AQ6PJP8 1040 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 CBWD2Q8IUF1 395 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 WDR49Q8IV35 697 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 SLC39A11Q8N1S5 342 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 EFHBQ8N7U6 833 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 FAM212AQ96EL1 285 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 RPGRIP1Q96KN7 1286 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 ZMAT2Q96NC0 199 aaKnown RBP22.27■■□□□ 1.16
VPS53-210ENST00000571456 PLAGL2Q9UPG8 496 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 MYO10Q9HD67 2058 aa22.27■■□□□ 1.16
VPS53-210ENST00000571456 NRP1O14786 923 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 CD44P16070 742 aaKnown RBP22.26■■□□□ 1.15
VPS53-210ENST00000571456 LRPAP1P30533 357 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 SLC11A1P49279 550 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 MCCD1P59942 119 aaPredicted RBP22.26■■□□□ 1.15
VPS53-210ENST00000571456 CAMK1Q14012 370 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 GLRA4Q5JXX5 417 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 SPATA1Q5VX52 437 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 ANKRD40Q6AI12 368 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 PDE12Q6L8Q7 609 aaKnown RBP22.26■■□□□ 1.15
VPS53-210ENST00000571456 TMC2Q8TDI7 906 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 NOC3LQ8WTT2 800 aaKnown RBP22.26■■□□□ 1.15
VPS53-210ENST00000571456 IGSF21Q96ID5 467 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 DNAJB4Q9UDY4 337 aa22.26■■□□□ 1.15
VPS53-210ENST00000571456 NCOR2Q9Y618 2525 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 MEFVO15553 781 aaPredicted RBP22.25■■□□□ 1.15
VPS53-210ENST00000571456 FGF18O76093 207 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 GNA14O95837 355 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 EPB41P11171 864 aaKnown RBP22.25■■□□□ 1.15
VPS53-210ENST00000571456 KRT13P13646 458 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 OR1G1P47890 313 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 STX1AQ16623 288 aa22.25■■□□□ 1.15
VPS53-210ENST00000571456 PTPN21Q16825 1174 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms