RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 IGFLR1Q9H665 355 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 ASB7Q9H672 318 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 TLE6Q9H808 572 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 CLDND1Q9NY35 253 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 RBAKQ9NYW8 714 aaPredicted RBP10.69□□□□□ -0.7
CLN3-220ENST00000566040 UBQLN1Q9UMX0 589 aaKnown RBP10.69□□□□□ -0.7
CLN3-220ENST00000566040 EXOC7Q9UPT5 735 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 TRAF3IP3Q9Y228 551 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 DERAQ9Y315 318 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 NME7Q9Y5B8 376 aa10.69□□□□□ -0.7
CLN3-220ENST00000566040 ANAPC1Q9H1A4 1944 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 COL4A2P08572 1712 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 PDXKO00764 312 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 C2CD2LO14523 706 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 PRPF40AO75400 957 aaKnown RBP10.68□□□□□ -0.7
CLN3-220ENST00000566040 B3GAT3O94766 335 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 IL9P15248 144 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 RPL9P32969 192 aaKnown RBP10.68□□□□□ -0.7
CLN3-220ENST00000566040 PRCPP42785 496 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 CYP2J2P51589 502 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 CLDN10P78369 228 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 CYP24A1Q07973 514 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 TMEM132DQ14C87 1099 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 SNRNP35Q16560 246 aaKnown RBP10.68□□□□□ -0.7
CLN3-220ENST00000566040 NFIL3Q16649 462 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 LLGL2Q6P1M3 1020 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.68□□□□□ -0.7
CLN3-220ENST00000566040 LIMS2Q7Z4I7 341 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 GPR65Q8IYL9 337 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 SYCP3Q8IZU3 236 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 SUSD6Q92537 303 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 HLA-CQ95604 372 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 NECAB3Q96P71 396 aaPredicted RBP10.68□□□□□ -0.7
CLN3-220ENST00000566040 ASB2Q96Q27 587 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 MTMR12Q9C0I1 747 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 CD320Q9NPF0 282 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 SLC38A7Q9NVC3 462 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 MTRRQ9UBK8 725 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 COG5Q9UP83 839 aa10.68□□□□□ -0.7
CLN3-220ENST00000566040 CARNS1A5YM72 827 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 TRIM49BA6NDI0 452 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 PPP1R3GB7ZBB8 358 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 NRG2O14511 850 aaPredicted RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 MBTPS2O43462 519 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 TADA2AO75478 443 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 IL18RAPO95256 599 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 NR3C1P04150 777 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 LILRA4P59901 499 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 DLG4P78352 724 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 MORC3Q14149 939 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 PSMD6Q15008 389 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 CLUL1Q15846 466 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 CCDC142Q17RM4 750 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 USP41Q3LFD5 358 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 VARS2Q5ST30 1063 aaKnown RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 ZNF658Q5TYW1 1059 aaPredicted RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 ANKRD54Q6NXT1 300 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 CD302Q8IX05 232 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 ADSSL1Q8N142 457 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 C12orf76Q8N812 135 aaPredicted RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 ATXN2LQ8WWM7 1075 aaKnown RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 RIN2Q8WYP3 895 aaPredicted RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 ZNF707Q96C28 371 aaPredicted RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 GSDMAQ96QA5 445 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 TSPAN18Q96SJ8 248 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 POP1Q99575 1024 aaKnown RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 CDCA3Q99618 268 aaPredicted RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 TTPALQ9BTX7 342 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 INTS13Q9NVM9 706 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 FNIP2Q9P278 1114 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 PUF60Q9UHX1 559 aaKnown RBP10.67□□□□□ -0.7
CLN3-220ENST00000566040 MYO10Q9HD67 2058 aa10.67□□□□□ -0.7
CLN3-220ENST00000566040 NUP210Q8TEM1 1887 aaPredicted RBP10.66□□□□□ -0.7
CLN3-220ENST00000566040 LRRIQ3A6PVS8 624 aaPredicted RBP10.66□□□□□ -0.7
CLN3-220ENST00000566040 KIAA0391O15091 583 aaKnown RBP10.66□□□□□ -0.7
CLN3-220ENST00000566040 TGM5O43548 720 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 HCRTO43612 131 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 LRRN2O75325 713 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 AKAP3O75969 853 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 VNN1O95497 513 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 URODP06132 367 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 SNRPFP62306 86 aaKnown RBP10.66□□□□□ -0.7
CLN3-220ENST00000566040 SKIV2LQ15477 1246 aaKnown RBP10.66□□□□□ -0.7
CLN3-220ENST00000566040 PSMD5Q16401 504 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 ISM2Q6H9L7 571 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 CENPPQ6IPU0 288 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 POTEHQ6S545 545 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 C15orf39Q6ZRI6 1047 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 STXBP4Q6ZWJ1 553 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 OSTM1Q86WC4 334 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 XXYLT1Q8NBI6 393 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 MICAL1Q8TDZ2 1067 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 PARD3BQ8TEW8 1205 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 KHSRPQ92945 711 aaKnown RBP eCLIP10.66□□□□□ -0.7
CLN3-220ENST00000566040 ELMO3Q96BJ8 720 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 FAM212AQ96EL1 285 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 TMEM209Q96SK2 561 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 CGRRF1Q99675 332 aa10.66□□□□□ -0.7
CLN3-220ENST00000566040 DUSP9Q99956 384 aaKnown RBP10.66□□□□□ -0.7
CLN3-220ENST00000566040 COL25A1Q9BXS0 654 aaPredicted RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms