RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 AGO2Q9UKV8 859 aaKnown RBP22.54■■□□□ 1.2
CLN3-219ENST00000565778 MTCL1Q9Y4B5 1905 aaKnown RBP22.54■■□□□ 1.2
CLN3-219ENST00000565778 C2orf16Q68DN1 1984 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 TISP43B9A030 160 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 TULP1O00294 542 aaPredicted RBP22.53■■□□□ 1.2
CLN3-219ENST00000565778 ADRB2P07550 413 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 LAMP2P13473 410 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 ROR1Q01973 937 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 POSTNQ15063 836 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 IER5LQ5T953 404 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 JADE1Q6IE81 842 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 BEST2Q8NFU1 509 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 POMGNT1Q8WZA1 660 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 HVCN1Q96D96 273 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 PANK4Q9NVE7 773 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 FBXL5Q9UKA1 691 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 PCDHB8Q9UN66 801 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 PCDHB13Q9Y5F0 798 aa22.53■■□□□ 1.2
CLN3-219ENST00000565778 CITO14578 2027 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 PRRG1O14668 218 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 TBC1D4O60343 1298 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 ABLIM3O94929 683 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 GCNT3O95395 438 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 ZSCAN22P10073 491 aaPredicted RBP22.52■■□□□ 1.2
CLN3-219ENST00000565778 AVPR2P30518 371 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 GUCY2FP51841 1108 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 DSTYKQ6XUX3 929 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 NXPE3Q969Y0 559 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 ACCSQ96QU6 501 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 IKZF4Q9H2S9 585 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 MFSD1Q9H3U5 465 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 EXOC7Q9UPT5 735 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 STYXL1Q9Y6J8 313 aa22.52■■□□□ 1.2
CLN3-219ENST00000565778 VWA8A3KMH1 1905 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 WDR27A2RRH5 827 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 YEATS4O95619 227 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 ATF2P15336 505 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 SPATA1Q5VX52 437 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 ZNF280DQ6N043 979 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 SYCP3Q8IZU3 236 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 SLC44A3Q8N4M1 653 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 STRA6Q9BX79 667 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 CYP4F11Q9HBI6 524 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 FBXL21Q9UKT6 434 aa22.51■■□□□ 1.19
CLN3-219ENST00000565778 TIMM13Q9Y5L4 95 aaPredicted RBP22.51■■□□□ 1.19
CLN3-219ENST00000565778 ZFP37Q9Y6Q3 630 aaPredicted RBP22.51■■□□□ 1.19
CLN3-219ENST00000565778 DENND4AQ7Z401 1863 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 M0QZQ0 153 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 CUTAO60888 179 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 PPP1R37O75864 691 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 LRG1P02750 347 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 VCPP55072 806 aaKnown RBP22.5■■□□□ 1.19
CLN3-219ENST00000565778 YWHAHQ04917 246 aaPredicted RBP22.5■■□□□ 1.19
CLN3-219ENST00000565778 KCNA1Q09470 495 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 L1TD1Q5T7N2 865 aaKnown RBP22.5■■□□□ 1.19
CLN3-219ENST00000565778 USP37Q86T82 979 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 CCDC65Q8IXS2 484 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 LRRC27Q9C0I9 530 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 ASB7Q9H672 318 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 HCFC1R1Q9NWW0 138 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 DNMT3BQ9UBC3 853 aaKnown RBP22.5■■□□□ 1.19
CLN3-219ENST00000565778 CDH7Q9ULB5 785 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 DUSP12Q9UNI6 340 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 DERAQ9Y315 318 aa22.5■■□□□ 1.19
CLN3-219ENST00000565778 F13A1P00488 732 aa22.49■■□□□ 1.19
CLN3-219ENST00000565778 TMEM132DQ14C87 1099 aa22.49■■□□□ 1.19
CLN3-219ENST00000565778 PABPC1LQ4VXU2 614 aaKnown RBP22.49■■□□□ 1.19
CLN3-219ENST00000565778 TPGS2Q68CL5 300 aa22.49■■□□□ 1.19
CLN3-219ENST00000565778 ST13P5Q8NFI4 369 aaPredicted RBP22.49■■□□□ 1.19
CLN3-219ENST00000565778 ITFG1Q8TB96 612 aa22.49■■□□□ 1.19
CLN3-219ENST00000565778 DHX58Q96C10 678 aa22.49■■□□□ 1.19
CLN3-219ENST00000565778 PRRX2Q99811 253 aa22.49■■□□□ 1.19
CLN3-219ENST00000565778 OLFML3Q9NRN5 406 aa22.49■■□□□ 1.19
CLN3-219ENST00000565778 NARSO43776 548 aaKnown RBP22.48■■□□□ 1.19
CLN3-219ENST00000565778 NFICP08651 508 aa22.48■■□□□ 1.19
CLN3-219ENST00000565778 POU2F2P09086 479 aa22.48■■□□□ 1.19
CLN3-219ENST00000565778 CPB1P15086 417 aa22.48■■□□□ 1.19
CLN3-219ENST00000565778 PTPN2P17706 415 aa22.48■■□□□ 1.19
CLN3-219ENST00000565778 ADSSP30520 456 aa22.48■■□□□ 1.19
CLN3-219ENST00000565778 AMPD3Q01432 767 aa22.48■■□□□ 1.19
CLN3-219ENST00000565778 TCEAL8Q8IYN2 117 aa22.48■■□□□ 1.19
CLN3-219ENST00000565778 FGF13Q92913 245 aa22.48■■□□□ 1.19
CLN3-219ENST00000565778 FAM213AQ9BRX8 229 aa22.48■■□□□ 1.19
CLN3-219ENST00000565778 ARHGEF37A1IGU5 675 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 PPEF2O14830 753 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 OAZ2O95190 189 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 SEC24AO95486 1093 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 CFHP08603 1231 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 CASP5P51878 434 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 LILRA4P59901 499 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 POU5F1Q01860 360 aaKnown RBP22.47■■□□□ 1.19
CLN3-219ENST00000565778 ADCY1Q08828 1119 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 ALCAMQ13740 583 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 C9orf57Q5W0N0 161 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 SHC4Q6S5L8 630 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 CRELD2Q6UXH1 353 aaPredicted RBP22.47■■□□□ 1.19
CLN3-219ENST00000565778 IQUBQ8NA54 791 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 KCNG4Q8TDN1 519 aa22.47■■□□□ 1.19
CLN3-219ENST00000565778 OXCT2Q9BYC2 517 aaPredicted RBP22.47■■□□□ 1.19
CLN3-219ENST00000565778 TNMDQ9H2S6 317 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms