RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CLCN5P51795 746 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 HSP90AA2PQ14568 343 aaPredicted RBP18.72■□□□□ 0.59
CLN3-217ENST00000565354 SLC10A6Q3KNW5 377 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 FRMD5Q7Z6J6 570 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 CD302Q8IX05 232 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 COLGALT2Q8IYK4 626 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 SLC39A11Q8N1S5 342 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 GPD1LQ8N335 351 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 KIF12Q96FN5 646 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 COLEC11Q9BWP8 271 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 AGPAT3Q9NRZ7 376 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 CNTN3Q9P232 1028 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 MAPK8IP1Q9UQF2 711 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 CITO14578 2027 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 GOLGA8IPA6NC78 632 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 CASTOR2A6NHX0 329 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 GOLGA8JA6NMD2 632 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 NRP1O14786 923 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 XPOTO43592 962 aaKnown RBP18.71■□□□□ 0.59
CLN3-217ENST00000565354 CALUO43852 315 aaPredicted RBP18.71■□□□□ 0.59
CLN3-217ENST00000565354 EXTL3O43909 919 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 CLASP2O75122 1294 aaKnown RBP18.71■□□□□ 0.59
CLN3-217ENST00000565354 CA8P35219 290 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 CYP2J2P51589 502 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 DSC1Q08554 894 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 STIM1Q13586 685 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 ENOX2Q16206 610 aaKnown RBP18.71■□□□□ 0.59
CLN3-217ENST00000565354 ZNF658Q5TYW1 1059 aaPredicted RBP18.71■□□□□ 0.59
CLN3-217ENST00000565354 ISM2Q6H9L7 571 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 ZDHHC14Q8IZN3 488 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 TDRD5Q8NAT2 981 aaKnown RBP18.71■□□□□ 0.59
CLN3-217ENST00000565354 CXCL16Q9H2A7 254 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 MFSD1Q9H3U5 465 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 HSPBP1Q9NZL4 362 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 DENND4AQ7Z401 1863 aa18.71■□□□□ 0.59
CLN3-217ENST00000565354 LACTBL1A8MY62 500 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 TGFB1I1O43294 461 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 FAM189A1O60320 539 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 IL18RAPO95256 599 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 KCNE1P15382 129 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 BMS1Q14692 1282 aaKnown RBP18.7■□□□□ 0.58
CLN3-217ENST00000565354 XKR4Q5GH76 650 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 ALKAL1Q6UXT8 129 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 SMYD4Q8IYR2 804 aaPredicted RBP18.7■□□□□ 0.58
CLN3-217ENST00000565354 GUF1Q8N442 669 aaKnown RBP18.7■□□□□ 0.58
CLN3-217ENST00000565354 IGSF21Q96ID5 467 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 UROC1Q96N76 676 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 PPP1R10Q96QC0 940 aaKnown RBP18.7■□□□□ 0.58
CLN3-217ENST00000565354 NUP62CLQ9H1M0 184 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 CLSTN2Q9H4D0 955 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 KIAA1586Q9HCI6 787 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 RBAKQ9NYW8 714 aaPredicted RBP18.7■□□□□ 0.58
CLN3-217ENST00000565354 LIMD1Q9UGP4 676 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 MAN1B1Q9UKM7 699 aa18.7■□□□□ 0.58
CLN3-217ENST00000565354 TTC26A0AVF1 554 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 BIN1O00499 593 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 B4GALT3O60512 393 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 TADA2AO75478 443 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 WEE2P0C1S8 567 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 ID4P47928 161 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 POU5F1Q01860 360 aaKnown RBP18.69■□□□□ 0.58
CLN3-217ENST00000565354 SPAG1Q07617 926 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 RARS2Q5T160 578 aaKnown RBP18.69■□□□□ 0.58
CLN3-217ENST00000565354 KIAA1841Q6NSI8 718 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 ADSSL1Q8N142 457 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 PLCD3Q8N3E9 789 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 XXYLT1Q8NBI6 393 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 SPATA20Q8TB22 786 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 TSPAN18Q96SJ8 248 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 DZANK1Q9NVP4 752 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 UBQLN1Q9UMX0 589 aaKnown RBP18.69■□□□□ 0.58
CLN3-217ENST00000565354 USTQ9Y2C2 406 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.69■□□□□ 0.58
CLN3-217ENST00000565354 DMXL1Q9Y485 3027 aa18.69■□□□□ 0.58
CLN3-217ENST00000565354 ZNF233A6NK53 670 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 PDXKO00764 312 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 EXOC3O60645 756 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 MBD3O95983 291 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 TMEM132DQ14C87 1099 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 ATAT1Q5SQI0 421 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 JADE1Q6IE81 842 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 BRSK2Q8IWQ3 736 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 C12orf76Q8N812 135 aaPredicted RBP18.68■□□□□ 0.58
CLN3-217ENST00000565354 RDH13Q8NBN7 331 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 BEST2Q8NFU1 509 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 RABGGTAQ92696 567 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 DDX27Q96GQ7 796 aaKnown RBP18.68■□□□□ 0.58
CLN3-217ENST00000565354 ZMAT2Q96NC0 199 aaKnown RBP18.68■□□□□ 0.58
CLN3-217ENST00000565354 TSG101Q99816 390 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 ASB7Q9H672 318 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 GOLGA2P5Q9HBQ8 144 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 CACNG4Q9UBN1 327 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 STK39Q9UEW8 545 aa18.68■□□□□ 0.58
CLN3-217ENST00000565354 CXCL14O95715 111 aa18.67■□□□□ 0.58
CLN3-217ENST00000565354 PPP1R2P41236 205 aa18.67■□□□□ 0.58
CLN3-217ENST00000565354 CWF19L1Q69YN2 538 aaKnown RBP18.67■□□□□ 0.58
CLN3-217ENST00000565354 CRELD2Q6UXH1 353 aaPredicted RBP18.67■□□□□ 0.58
CLN3-217ENST00000565354 TMEM173Q86WV6 379 aaPredicted RBP18.67■□□□□ 0.58
CLN3-217ENST00000565354 C12orf56Q8IXR9 622 aa18.67■□□□□ 0.58
CLN3-217ENST00000565354 ZSWIM2Q8NEG5 633 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms