RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 LMO3Q8TAP4 145 aa13.78□□□□□ -0.2
CLK3-214ENST00000564096 HELQQ8TDG4 1101 aa13.78□□□□□ -0.2
CLK3-214ENST00000564096 FAM84AQ96KN4 292 aa13.78□□□□□ -0.2
CLK3-214ENST00000564096 PANX2Q96RD6 677 aa13.78□□□□□ -0.2
CLK3-214ENST00000564096 LBHD1Q9BQE6 289 aaPredicted RBP13.78□□□□□ -0.2
CLK3-214ENST00000564096 NAA15Q9BXJ9 866 aaKnown RBP13.78□□□□□ -0.2
CLK3-214ENST00000564096 MTIF3Q9H2K0 278 aaKnown RBP13.78□□□□□ -0.2
CLK3-214ENST00000564096 VRTNQ9H8Y1 702 aa13.78□□□□□ -0.2
CLK3-214ENST00000564096 NLRC4Q9NPP4 1024 aa13.78□□□□□ -0.2
CLK3-214ENST00000564096 SIX4Q9UIU6 781 aa13.78□□□□□ -0.2
CLK3-214ENST00000564096 DNAJC12Q9UKB3 198 aa13.78□□□□□ -0.2
CLK3-214ENST00000564096 AGAP1Q9UPQ3 857 aa13.78□□□□□ -0.2
CLK3-214ENST00000564096 LRRC53A6NM62 1247 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 F8VZ95 297 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 OFD1O75665 1012 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 NOL4O94818 638 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 PAX3P23760 479 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 ITGB8P26012 769 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 RPL9P32969 192 aaKnown RBP13.77□□□□□ -0.21
CLK3-214ENST00000564096 STAT1P42224 750 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 TAF6P49848 677 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 FXR1P51114 621 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLK3-214ENST00000564096 RNASELQ05823 741 aaKnown RBP13.77□□□□□ -0.21
CLK3-214ENST00000564096 TUSC3Q13454 348 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 CUL2Q13617 745 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 ZBTB6Q15916 424 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 SV2CQ496J9 727 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 SFMBT2Q5VUG0 894 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 C9orf57Q5W0N0 161 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 PDXDC1Q6P996 788 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 RTN4RL1Q86UN2 441 aaPredicted RBP13.77□□□□□ -0.21
CLK3-214ENST00000564096 LRRC43Q8N309 656 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 TTC39CQ8N584 583 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 OR8K1Q8NGG5 319 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 SYN2Q92777 582 aaPredicted RBP13.77□□□□□ -0.21
CLK3-214ENST00000564096 JAKMIP2Q96AA8 810 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 C18orf25Q96B23 403 aaPredicted RBP13.77□□□□□ -0.21
CLK3-214ENST00000564096 DDX27Q96GQ7 796 aaKnown RBP13.77□□□□□ -0.21
CLK3-214ENST00000564096 HPDLQ96IR7 371 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 FAM193BQ96PV7 902 aaPredicted RBP13.77□□□□□ -0.21
CLK3-214ENST00000564096 DNAJC7Q99615 494 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 PI4K2AQ9BTU6 479 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 STK33Q9BYT3 514 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 DNAI2Q9GZS0 605 aa13.77□□□□□ -0.21
CLK3-214ENST00000564096 FAM124BQ9H5Z6 455 aaPredicted RBP13.77□□□□□ -0.21
CLK3-214ENST00000564096 UBE2TQ9NPD8 197 aaPredicted RBP13.77□□□□□ -0.21
CLK3-214ENST00000564096 CITO14578 2027 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.76□□□□□ -0.21
CLK3-214ENST00000564096 ARHGEF37A1IGU5 675 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 PODXLO00592 558 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 POMCP01189 267 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 FGFR1P11362 822 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 FERP16591 822 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 GUCY2FP51841 1108 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 ADKP55263 362 aaKnown RBP13.76□□□□□ -0.21
CLK3-214ENST00000564096 ARID5BQ14865 1188 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 ASIC2Q16515 512 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 HS1BP3Q53T59 392 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 CLLU1OSQ5K130 101 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 PHLDB3Q6NSJ2 640 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 ARHGEF19Q8IW93 802 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 TC2NQ8N9U0 490 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 BAP1Q92560 729 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 DPF3Q92784 378 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 BADQ92934 168 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 XYLT2Q9H1B5 865 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 NR2E3Q9Y5X4 410 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 ANK1P16157 1881 aa13.76□□□□□ -0.21
CLK3-214ENST00000564096 ANO9A1A5B4 782 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 CARNS1A5YM72 827 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 ZBBXA8MT70 800 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 LRRN2O75325 713 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 SOX5P35711 763 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 JAM2P57087 298 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 WDR5P61964 334 aaKnown RBP13.75□□□□□ -0.21
CLK3-214ENST00000564096 APBA1Q02410 837 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 DRAP1Q14919 205 aaPredicted RBP13.75□□□□□ -0.21
CLK3-214ENST00000564096 ARHGAP44Q17R89 818 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 TCTN1Q2MV58 587 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 WDR72Q3MJ13 1102 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 SPOPLQ6IQ16 392 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 GSTCDQ8NEC7 633 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 BAG1Q99933 345 aaPredicted RBP13.75□□□□□ -0.21
CLK3-214ENST00000564096 CYP3A43Q9HB55 503 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 APOBEC3GQ9HC16 384 aaKnown RBP13.75□□□□□ -0.21
CLK3-214ENST00000564096 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.75□□□□□ -0.211e-6■■■■■ 73.2
CLK3-214ENST00000564096 TBC1D13Q9NVG8 400 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 NXF1Q9UBU9 619 aaKnown RBP13.75□□□□□ -0.21
CLK3-214ENST00000564096 PLAGL2Q9UPG8 496 aa13.75□□□□□ -0.21
CLK3-214ENST00000564096 BZW2Q9Y6E2 419 aaKnown RBP13.75□□□□□ -0.21
CLK3-214ENST00000564096 LTBP2Q14767 1821 aa13.74□□□□□ -0.21
CLK3-214ENST00000564096 CASTOR2A6NHX0 329 aa13.74□□□□□ -0.21
CLK3-214ENST00000564096 TBKBP1A7MCY6 615 aa13.74□□□□□ -0.21
CLK3-214ENST00000564096 PIRO00625 290 aa13.74□□□□□ -0.21
CLK3-214ENST00000564096 CST3P01034 146 aaPredicted RBP13.74□□□□□ -0.21
CLK3-214ENST00000564096 FGBP02675 491 aa13.74□□□□□ -0.21
CLK3-214ENST00000564096 ACRP10323 421 aa13.74□□□□□ -0.21
CLK3-214ENST00000564096 HNRNPH3P31942 346 aaKnown RBP13.74□□□□□ -0.21
CLK3-214ENST00000564096 ASPAP45381 313 aa13.74□□□□□ -0.21
CLK3-214ENST00000564096 SOX4Q06945 474 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms