RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CDY2AQ9Y6F7 541 aa9.62□□□□□ -0.87
VPS39-207ENST00000563692 ARID2Q68CP9 1835 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 TET1Q8NFU7 2136 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 A0A087WZ62 844 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 SMIM35A0A1B0GVV1 85 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 CTAGE9A4FU28 777 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 F8VZ95 297 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 RBAK-RBAKDNI3L0D1 243 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 RIOK3O14730 519 aaKnown RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 URI1O94763 535 aaPredicted RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 UPP2O95045 317 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 PLEKP08567 350 aaPredicted RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 MCF2P10911 925 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 HARSP12081 509 aaKnown RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 TNFAIP3P21580 790 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 ARHGAP25P42331 645 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 CYP27A1Q02318 531 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 GFPT1Q06210 699 aaPredicted RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 BIRC3Q13489 604 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 BMS1Q14692 1282 aaKnown RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 ENOX2Q16206 610 aaKnown RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 DUOXA2Q1HG44 320 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 TCTN1Q2MV58 587 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 MARCH8Q5T0T0 291 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 SMYD5Q6GMV2 418 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 PHLDB3Q6NSJ2 640 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 CRELD2Q6UXH1 353 aaPredicted RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 KIAA0319LQ8IZA0 1049 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 NME8Q8N427 588 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 RNF10Q8N5U6 811 aaKnown RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 PLEKHO2Q8TD55 490 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 SECISBP2LQ93073 1101 aaKnown RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 CGRRF1Q99675 332 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 FDXACB1Q9BRP7 624 aaPredicted RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 FTHL17Q9BXU8 183 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 ADAMTS1Q9UHI8 967 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 MTUS1Q9ULD2 1270 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 REXO2Q9Y3B8 237 aaKnown RBP9.61□□□□□ -0.87
VPS39-207ENST00000563692 TRPV2Q9Y5S1 764 aa9.61□□□□□ -0.87
VPS39-207ENST00000563692 WDR81Q562E7 1941 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 CDH23Q9H251 3354 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 LCHNA4D1U4 455 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 RFXAPO00287 272 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 FOXN3O00409 490 aaPredicted RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 PJA2O43164 708 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 TACC1O75410 805 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 ERLIN2O94905 339 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 IL18RAPO95256 599 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 SLU7O95391 586 aaKnown RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 C4BPAP04003 597 aaKnown RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 PROZP22891 400 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 NAP1L1P55209 391 aaKnown RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 BPIFB4P59827 614 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 ERVK-21P61565 698 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 PTK2Q05397 1052 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 MGAT3Q09327 533 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 PAK2Q13177 524 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 LPIN1Q14693 890 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 NAB2Q15742 525 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 IFI16Q16666 785 aaKnown RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 AAK1Q2M2I8 961 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 ZNF568Q3ZCX4 644 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 ZACNQ401N2 412 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 TJAP1Q5JTD0 557 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 FBXO47Q5MNV8 452 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 GJB7Q6PEY0 223 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 FAM43BQ6ZT52 329 aaPredicted RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 ZNF571Q7Z3V5 609 aaPredicted RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 WDR49Q8IV35 697 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 BRSK2Q8IWQ3 736 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 PPM1KQ8N3J5 372 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 ATXN2LQ8WWM7 1075 aaKnown RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 TOP1MTQ969P6 601 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 SAMD11Q96NU1 681 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 ALS2CR12Q96Q35 445 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 NAPGQ99747 312 aaPredicted RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 ADPGKQ9BRR6 497 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 IMPG2Q9BZV3 1241 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 RPF1Q9H9Y2 349 aaKnown RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 IFT122Q9HBG6 1241 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 PDE11AQ9HCR9 933 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 PTPRHQ9HD43 1115 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 C1orf112Q9NSG2 853 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 CPSF3Q9UKF6 684 aaKnown RBP9.6□□□□□ -0.87
VPS39-207ENST00000563692 INTUQ9ULD6 942 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 GINS2Q9Y248 185 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 SQORQ9Y6N5 450 aa9.6□□□□□ -0.87
VPS39-207ENST00000563692 UQCRHLA0A096LP55 91 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 LINC01553A4QN01 128 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 ARHGEF15O94989 841 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 TNNC2P02585 160 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 VTNP04004 478 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 UQCRHP07919 91 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 CLTAP09496 248 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 POU3F3P20264 500 aaPredicted RBP9.59□□□□□ -0.87
VPS39-207ENST00000563692 USP8P40818 1118 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 PIK3CAP42336 1068 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 TUBB4BP68371 445 aa9.59□□□□□ -0.87
VPS39-207ENST00000563692 MRPS5P82675 430 aaKnown RBP9.59□□□□□ -0.87
VPS39-207ENST00000563692 GCNT1Q02742 428 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms