RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 PRRX2Q99811 253 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 CPSF3Q9UKF6 684 aaKnown RBP18.31■□□□□ 0.52
CLK3-210ENST00000563112 AGO2Q9UKV8 859 aaKnown RBP18.31■□□□□ 0.52
CLK3-210ENST00000563112 PCDHB8Q9UN66 801 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 PCDHB13Q9Y5F0 798 aa18.31■□□□□ 0.52
CLK3-210ENST00000563112 FAM189A1O60320 539 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 YEATS4O95619 227 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 ADRB2P07550 413 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 POU2F2P09086 479 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 ZSCAN22P10073 491 aaPredicted RBP18.3■□□□□ 0.52
CLK3-210ENST00000563112 LAMP2P13473 410 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 ROR1Q01973 937 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 MRPL58Q14197 206 aaKnown RBP18.3■□□□□ 0.52
CLK3-210ENST00000563112 ZBTB41Q5SVQ8 909 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 FOXD4L5Q5VV16 416 aaPredicted RBP18.3■□□□□ 0.52
CLK3-210ENST00000563112 DSTYKQ6XUX3 929 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 FOXD4L4Q8WXT5 416 aaPredicted RBP18.3■□□□□ 0.52
CLK3-210ENST00000563112 ACCSQ96QU6 501 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 SMOC2Q9H3U7 446 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 ASB7Q9H672 318 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 TBC1D7Q9P0N9 293 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 FBXL5Q9UKA1 691 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 STYXL1Q9Y6J8 313 aa18.3■□□□□ 0.52
CLK3-210ENST00000563112 PRRG1O14668 218 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 CUTAO60888 179 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 ABLIM3O94929 683 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 GCNT3O95395 438 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 LRG1P02750 347 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 PAX3P23760 479 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 ACOT2P49753 483 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 ALCAMQ13740 583 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 SPATA1Q5VX52 437 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 TPGS2Q68CL5 300 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 JADE1Q6IE81 842 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 USP37Q86T82 979 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 CCDC65Q8IXS2 484 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 POMGNT1Q8WZA1 660 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 OXCT2Q9BYC2 517 aaPredicted RBP18.29■□□□□ 0.52
CLK3-210ENST00000563112 MFSD1Q9H3U5 465 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 OLFML3Q9NRN5 406 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 PANK4Q9NVE7 773 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 DUSP12Q9UNI6 340 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 DERAQ9Y315 318 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 MYH15Q9Y2K3 1946 aa18.29■□□□□ 0.52
CLK3-210ENST00000563112 DOCK8Q8NF50 2099 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 A0A087X0B3 334 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 M0QZQ0 153 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 TBC1D4O60343 1298 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 PPP1R37O75864 691 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 F13A1P00488 732 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 ATF2P15336 505 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 AVPR2P30518 371 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 NTHL1P78549 312 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 AMPD3Q01432 767 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 POU5F1Q01860 360 aaKnown RBP18.28■□□□□ 0.52
CLK3-210ENST00000563112 YWHAHQ04917 246 aaPredicted RBP18.28■□□□□ 0.52
CLK3-210ENST00000563112 TMEM132DQ14C87 1099 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 L1TD1Q5T7N2 865 aaKnown RBP18.28■□□□□ 0.52
CLK3-210ENST00000563112 SYCP3Q8IZU3 236 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 STRA6Q9BX79 667 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 CUEDC2Q9H467 287 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 CYP4F11Q9HBI6 524 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 FBXL21Q9UKT6 434 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 CDH7Q9ULB5 785 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 MAFFQ9ULX9 164 aa18.28■□□□□ 0.52
CLK3-210ENST00000563112 ARHGEF37A1IGU5 675 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 WDR27A2RRH5 827 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 TISP43B9A030 160 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 PDGFBP01127 241 aaPredicted RBP18.27■□□□□ 0.52
CLK3-210ENST00000563112 GUCY2FP51841 1108 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 FOXD4L6Q3SYB3 417 aaPredicted RBP18.27■□□□□ 0.52
CLK3-210ENST00000563112 PABPC1LQ4VXU2 614 aaKnown RBP18.27■□□□□ 0.52
CLK3-210ENST00000563112 ATL3Q6DD88 541 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 FOXD4L3Q6VB84 417 aaPredicted RBP18.27■□□□□ 0.52
CLK3-210ENST00000563112 STXBP4Q6ZWJ1 553 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 TCEAL8Q8IYN2 117 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 SLC44A3Q8N4M1 653 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 IQUBQ8NA54 791 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 SPRYD3Q8NCJ5 442 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 KCNG4Q8TDN1 519 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 RSAD2Q8WXG1 361 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 TNMDQ9H2S6 317 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 KCNH3Q9ULD8 1083 aa18.27■□□□□ 0.52
CLK3-210ENST00000563112 DOCK6Q96HP0 2047 aa18.27■□□□□ 0.51
CLK3-210ENST00000563112 FRMD3A2A2Y4 597 aa18.26■□□□□ 0.51
CLK3-210ENST00000563112 OAZ2O95190 189 aa18.26■□□□□ 0.51
CLK3-210ENST00000563112 IL18RAPO95256 599 aa18.26■□□□□ 0.51
CLK3-210ENST00000563112 LDHAP00338 332 aaKnown RBP18.26■□□□□ 0.51
CLK3-210ENST00000563112 CPB1P15086 417 aa18.26■□□□□ 0.51
CLK3-210ENST00000563112 PTPN2P17706 415 aa18.26■□□□□ 0.51
CLK3-210ENST00000563112 VCPP55072 806 aaKnown RBP18.26■□□□□ 0.51
CLK3-210ENST00000563112 TMEM206Q9H813 350 aa18.26■□□□□ 0.51
CLK3-210ENST00000563112 DNMT3BQ9UBC3 853 aaKnown RBP18.26■□□□□ 0.51
CLK3-210ENST00000563112 AFF4Q9UHB7 1163 aaKnown RBP18.26■□□□□ 0.51
CLK3-210ENST00000563112 CFAP45Q9UL16 551 aa18.26■□□□□ 0.51
CLK3-210ENST00000563112 MRPS23Q9Y3D9 190 aaKnown RBP18.26■□□□□ 0.51
CLK3-210ENST00000563112 C2CD2Q9Y426 696 aa18.26■□□□□ 0.51
CLK3-210ENST00000563112 TIMM13Q9Y5L4 95 aaPredicted RBP18.26■□□□□ 0.51
CLK3-210ENST00000563112 PIEZO1Q92508 2521 aa18.26■□□□□ 0.51
CLK3-210ENST00000563112 ANHXE9PGG2 379 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms