RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.53■■□□□ 1.36
SNX1-210ENST00000560260 VWA8A3KMH1 1905 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 CARNS1A5YM72 827 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 SPTLC1O15269 473 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 CCDC192P0DO97 292 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 KRT13P13646 458 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 IRS1P35568 1242 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 ENPEPQ07075 957 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 TDRD10Q5VZ19 366 aaKnown RBP23.52■■□□□ 1.36
SNX1-210ENST00000560260 DDX53Q86TM3 631 aaKnown RBP23.52■■□□□ 1.36
SNX1-210ENST00000560260 ENOX1Q8TC92 643 aaKnown RBP23.52■■□□□ 1.36
SNX1-210ENST00000560260 CACTINQ8WUQ7 758 aaKnown RBP23.52■■□□□ 1.36
SNX1-210ENST00000560260 HERC2P3Q9BVR0 1158 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 ARMCX3Q9UH62 379 aaPredicted RBP23.52■■□□□ 1.36
SNX1-210ENST00000560260 ITGA11Q9UKX5 1188 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 LZTS1Q9Y250 596 aa23.52■■□□□ 1.36
SNX1-210ENST00000560260 MYO9BQ13459 2157 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 TADA2AO75478 443 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 TNNC2P02585 160 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 C4BPAP04003 597 aaKnown RBP23.51■■□□□ 1.35
SNX1-210ENST00000560260 AARSP49588 968 aaKnown RBP eCLIP23.51■■□□□ 1.35
SNX1-210ENST00000560260 MARSP56192 900 aaKnown RBP23.51■■□□□ 1.35
SNX1-210ENST00000560260 ERVFC1P60507 584 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 CCDC40Q4G0X9 1142 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 C15orf39Q6ZRI6 1047 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 FRMD5Q7Z6J6 570 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 B3GALT6Q96L58 329 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 CNOT6LQ96LI5 555 aaKnown RBP23.51■■□□□ 1.35
SNX1-210ENST00000560260 ZBP1Q9H171 429 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 MTMR10Q9NXD2 777 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 AGAP1Q9UPQ3 857 aa23.51■■□□□ 1.35
SNX1-210ENST00000560260 TSC2P49815 1807 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 VNN1O95497 513 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 GCLMP48507 274 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 UBE3AQ05086 875 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 NCAPHQ15003 741 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 TIGD5Q53EQ6 642 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 DCAF17Q5H9S7 520 aaPredicted RBP23.5■■□□□ 1.35
SNX1-210ENST00000560260 SV2AQ7L0J3 742 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 TRIM59Q8IWR1 403 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 MYLIPQ8WY64 445 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 SLC35C1Q96A29 364 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 THAP9Q9H5L6 903 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 MMRN2Q9H8L6 949 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 SAMSN1Q9NSI8 373 aaKnown RBP23.5■■□□□ 1.35
SNX1-210ENST00000560260 NFE2L3Q9Y4A8 694 aa23.5■■□□□ 1.35
SNX1-210ENST00000560260 SF3B1O75533 1304 aaKnown RBP eCLIP23.49■■□□□ 1.354e-7■■■■■ 86.2
SNX1-210ENST00000560260 FSCN2O14926 492 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 CST3P01034 146 aaPredicted RBP23.49■■□□□ 1.35
SNX1-210ENST00000560260 SOD2P04179 222 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 KRT19P08727 400 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 KRT17Q04695 432 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 ZACNQ401N2 412 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 HSP90AA4PQ58FG1 418 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 VPS52Q8N1B4 723 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 AUTS2Q8WXX7 1259 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 CDX2Q99626 313 aaPredicted RBP23.49■■□□□ 1.35
SNX1-210ENST00000560260 LMAN2LQ9H0V9 348 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 METTL14Q9HCE5 456 aaKnown RBP23.49■■□□□ 1.35
SNX1-210ENST00000560260 TLR9Q9NR96 1032 aa23.49■■□□□ 1.35
SNX1-210ENST00000560260 REV3LO60673 3130 aa23.48■■□□□ 1.35
SNX1-210ENST00000560260 IKBKBO14920 756 aa23.48■■□□□ 1.35
SNX1-210ENST00000560260 AP3M2P53677 418 aa23.48■■□□□ 1.35
SNX1-210ENST00000560260 LILRA4P59901 499 aa23.48■■□□□ 1.35
SNX1-210ENST00000560260 BIRC3Q13489 604 aa23.48■■□□□ 1.35
SNX1-210ENST00000560260 TPD52L1Q16890 204 aaPredicted RBP23.48■■□□□ 1.35
SNX1-210ENST00000560260 RTP2Q5QGT7 225 aa23.48■■□□□ 1.35
SNX1-210ENST00000560260 AOPEPQ8N6M6 819 aa23.48■■□□□ 1.35
SNX1-210ENST00000560260 ELMO3Q96BJ8 720 aa23.48■■□□□ 1.35
SNX1-210ENST00000560260 MRPL38Q96DV4 380 aaKnown RBP23.48■■□□□ 1.35
SNX1-210ENST00000560260 NUB1Q9Y5A7 615 aa23.48■■□□□ 1.35
SNX1-210ENST00000560260 FGFR1OPO95684 399 aaKnown RBP23.47■■□□□ 1.35
SNX1-210ENST00000560260 GNA14O95837 355 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 TKTP29401 623 aaKnown RBP23.47■■□□□ 1.35
SNX1-210ENST00000560260 TAF6P49848 677 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 RBP5P82980 135 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 MYL5Q02045 173 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 CBWD6Q4V339 395 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 CBWD3Q5JTY5 395 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 CBWD5Q5RIA9 395 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 FAM171A1Q5VUB5 890 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 TCERG1LQ5VWI1 586 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 PLPP4Q5VZY2 271 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 USP37Q86T82 979 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 LRRC52Q8N7C0 313 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 SUSD3Q96L08 255 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 ZNF560Q96MR9 790 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 TCF25Q9BQ70 676 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 HSD3B7Q9H2F3 369 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 CHST7Q9NS84 486 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 PUF60Q9UHX1 559 aaKnown RBP23.47■■□□□ 1.35
SNX1-210ENST00000560260 MTCH2Q9Y6C9 303 aa23.47■■□□□ 1.35
SNX1-210ENST00000560260 MYO7AQ13402 2215 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 LRRN2O75325 713 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 CTSAP10619 480 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 FGFR3P22607 806 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 MYL6P60660 151 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 PTPN14Q15678 1187 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 CDKAL1Q5VV42 579 aa23.46■■□□□ 1.35
SNX1-210ENST00000560260 DHX40Q8IX18 779 aaKnown RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms