RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 C15orf39Q6ZRI6 1047 aa12.38□□□□□ -0.43
SNX1-204ENST00000559061 TRIML1Q8N9V2 468 aa12.38□□□□□ -0.43
SNX1-204ENST00000559061 PARD3BQ8TEW8 1205 aa12.38□□□□□ -0.43
SNX1-204ENST00000559061 NELFBQ8WX92 580 aa12.38□□□□□ -0.43
SNX1-204ENST00000559061 DDX27Q96GQ7 796 aaKnown RBP12.38□□□□□ -0.43
SNX1-204ENST00000559061 TSPAN18Q96SJ8 248 aa12.38□□□□□ -0.43
SNX1-204ENST00000559061 KIAA1586Q9HCI6 787 aa12.38□□□□□ -0.43
SNX1-204ENST00000559061 DPP3Q9NY33 737 aa12.38□□□□□ -0.43
SNX1-204ENST00000559061 CTNND2Q9UQB3 1225 aa12.38□□□□□ -0.43
SNX1-204ENST00000559061 SF3B1O75533 1304 aaKnown RBP eCLIP12.37□□□□□ -0.434e-7■■■■■ 86.2
SNX1-204ENST00000559061 MTCL1Q9Y4B5 1905 aaKnown RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 M0QZQ0 153 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 MAPK13O15264 365 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 CALUO43852 315 aaPredicted RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 TBC1D4O60343 1298 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 CLASP2O75122 1294 aaKnown RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 LRRN2O75325 713 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 TADA2AO75478 443 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 VNN1O95497 513 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 ITGB3P05106 788 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 CNPP09543 421 aaKnown RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 RPL17P18621 184 aaKnown RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 POLR2BP30876 1174 aaKnown RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 NRIP1P48552 1158 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 STX17P56962 302 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 LILRA4P59901 499 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 TFAMQ00059 246 aaKnown RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 KRT17Q04695 432 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 MRPL58Q14197 206 aaKnown RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 SMC1AQ14683 1233 aaKnown RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 FAM171A1Q5VUB5 890 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 TDRD10Q5VZ19 366 aaKnown RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 CEP135Q66GS9 1140 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 KLHL10Q6JEL2 608 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 NT5DC4Q86YG4 428 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 WDR49Q8IV35 697 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 BEST2Q8NFU1 509 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 LNX1Q8TBB1 728 aaPredicted RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 SLC22A17Q8WUG5 538 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 PPM1EQ8WY54 764 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 ELMO3Q96BJ8 720 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 CCDC127Q96BQ5 260 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 DHTKD1Q96HY7 919 aaPredicted RBP12.37□□□□□ -0.43
SNX1-204ENST00000559061 SUSD3Q96L08 255 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 KLHL5Q96PQ7 755 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 RXFP1Q9HBX9 757 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 ENTPD7Q9NQZ7 604 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 C2orf16Q68DN1 1984 aa12.37□□□□□ -0.43
SNX1-204ENST00000559061 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.36□□□□□ -0.43
SNX1-204ENST00000559061 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.36□□□□□ -0.43
SNX1-204ENST00000559061 CARNS1A5YM72 827 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 C2CD2LO14523 706 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 TEX28O15482 410 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 CXCL14O95715 111 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 MBD3O95983 291 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 CST3P01034 146 aaPredicted RBP12.36□□□□□ -0.43
SNX1-204ENST00000559061 C4BPAP04003 597 aaKnown RBP12.36□□□□□ -0.43
SNX1-204ENST00000559061 TRIM49P0CI25 452 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 TRIM49CP0CI26 452 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 DLATP10515 647 aaKnown RBP12.36□□□□□ -0.43
SNX1-204ENST00000559061 GLUD2P49448 558 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 LRRC63Q05C16 580 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 PPP3CAQ08209 521 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 ADAM9Q13443 819 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 FOXR2Q6PJQ5 311 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.36□□□□□ -0.43
SNX1-204ENST00000559061 TMC7Q7Z402 723 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 LIMS2Q7Z4I7 341 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 RBM23Q86U06 439 aaKnown RBP12.36□□□□□ -0.43
SNX1-204ENST00000559061 PIK3R5Q8WYR1 880 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 RTP3Q9BQQ7 232 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 CLSTN3Q9BQT9 956 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 XYLT2Q9H1B5 865 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 NGRNQ9NPE2 291 aaKnown RBP12.36□□□□□ -0.43
SNX1-204ENST00000559061 CLEC1BQ9P126 229 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 PUF60Q9UHX1 559 aaKnown RBP12.36□□□□□ -0.43
SNX1-204ENST00000559061 NME7Q9Y5B8 376 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 C5orf42Q9H799 3197 aa12.36□□□□□ -0.43
SNX1-204ENST00000559061 GOLGA6L22H0YM25 854 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 PSMA7O14818 248 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 KIF20AO95235 890 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 VNN2O95498 520 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 NLRP12P59046 1061 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 PAK1Q13153 545 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 ADAM15Q13444 863 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 USP41Q3LFD5 358 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 PDE12Q6L8Q7 609 aaKnown RBP12.35□□□□□ -0.43
SNX1-204ENST00000559061 C11orf57Q6ZUT1 292 aaPredicted RBP12.35□□□□□ -0.43
SNX1-204ENST00000559061 TRAPPC11Q7Z392 1133 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 IRF2BP1Q8IU81 584 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 FAM186BQ8IYM0 893 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 EFHBQ8N7U6 833 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 TMC2Q8TDI7 906 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 RIN2Q8WYP3 895 aaPredicted RBP12.35□□□□□ -0.43
SNX1-204ENST00000559061 TTPALQ9BTX7 342 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 MTRRQ9UBK8 725 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 ITGA11Q9UKX5 1188 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 PCDHB8Q9UN66 801 aa12.35□□□□□ -0.43
SNX1-204ENST00000559061 TIMM13Q9Y5L4 95 aaPredicted RBP12.35□□□□□ -0.43
SNX1-204ENST00000559061 DENND4AQ7Z401 1863 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms