RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 SNRNP35Q16560 246 aaKnown RBP15.39■□□□□ 0.05
SHMT2-217ENST00000555116 COBLL1Q53SF7 1204 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 C9orf57Q5W0N0 161 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 TMEM184AQ6ZMB5 413 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 SLC22A17Q8WUG5 538 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 ATXN2LQ8WWM7 1075 aaKnown RBP15.39■□□□□ 0.05
SHMT2-217ENST00000555116 PIK3R5Q8WYR1 880 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 SUSD3Q96L08 255 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 GRPEL1Q9HAV7 217 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 DPP3Q9NY33 737 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 CLEC1BQ9P126 229 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 MAN1B1Q9UKM7 699 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 PIRO00625 290 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 TEX28O15482 410 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 TRAPPC3O43617 180 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 NR3C1P04150 777 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 TKTP29401 623 aaKnown RBP15.38■□□□□ 0.05
SHMT2-217ENST00000555116 PRCPP42785 496 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 AARSP49588 968 aaKnown RBP eCLIP15.38■□□□□ 0.05
SHMT2-217ENST00000555116 CYP24A1Q07973 514 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 ZSCAN23Q3MJ62 389 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 PRSS55Q6UWB4 352 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-217ENST00000555116 EP400NLQ6ZTU2 488 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 CEP57Q86XR8 500 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 RDH13Q8NBN7 331 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 LNX1Q8TBB1 728 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-217ENST00000555116 FAM84AQ96KN4 292 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 MFSD14AQ96MC6 490 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 EMILIN2Q9BXX0 1053 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 NUB1Q9Y5A7 615 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 HCFC2Q9Y5Z7 792 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 TSC2P49815 1807 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 PTPRJQ12913 1337 aa15.38■□□□□ 0.05
SHMT2-217ENST00000555116 EXOC3O60645 756 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 ZNF445P59923 1031 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 TFAMQ00059 246 aaKnown RBP15.37■□□□□ 0.05
SHMT2-217ENST00000555116 MYBPC2Q14324 1141 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 PSMD6Q15008 389 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 SURF1Q15526 300 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 NFIL3Q16649 462 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 LEXMQ3ZCV2 418 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 ZCWPW2Q504Y3 356 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 LLGL2Q6P1M3 1020 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 MSLNLQ96KJ4 702 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.37■□□□□ 0.05
SHMT2-217ENST00000555116 FNIP2Q9P278 1114 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 H3BQ06 376 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-217ENST00000555116 SYN3O14994 580 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 CALUO43852 315 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-217ENST00000555116 NDUFV1P49821 464 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 MRPS5P82675 430 aaKnown RBP15.37■□□□□ 0.05
SHMT2-217ENST00000555116 CXorf38Q8TB03 319 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 CACTINQ8WUQ7 758 aaKnown RBP15.37■□□□□ 0.05
SHMT2-217ENST00000555116 GTPBP4Q9BZE4 634 aaKnown RBP15.37■□□□□ 0.05
SHMT2-217ENST00000555116 INTS13Q9NVM9 706 aa15.37■□□□□ 0.05
SHMT2-217ENST00000555116 BARX2Q9UMQ3 279 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-217ENST00000555116 M0QZQ0 153 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 SPTLC1O15269 473 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 EPCAMP16422 314 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 RPL17P18621 184 aaKnown RBP15.36■□□□□ 0.05
SHMT2-217ENST00000555116 BMP6P22004 513 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 KLRC2P26717 231 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 CASP4P49662 377 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 CLCN4P51793 760 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 LILRA4P59901 499 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 PSMD5Q16401 504 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 LMBRD2Q68DH5 695 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-217ENST00000555116 SCARA3Q6AZY7 606 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 ISM2Q6H9L7 571 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 PPFIBP1Q86W92 1011 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 ADSSL1Q8N142 457 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 C1orf127Q8N9H9 656 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 OR5B17Q8NGF7 314 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-217ENST00000555116 PLEKHO2Q8TD55 490 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 ASB2Q96Q27 587 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 CLSTN3Q9BQT9 956 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 TMEM63CQ9P1W3 806 aa15.36■□□□□ 0.05
SHMT2-217ENST00000555116 TULP1O00294 542 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-217ENST00000555116 ADH1AP07327 375 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 KCNQ1P51787 676 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 CREMQ03060 361 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 MORC3Q14149 939 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 CAMK4Q16566 473 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 AAK1Q2M2I8 961 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 CENPPQ6IPU0 288 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 ANKRD54Q6NXT1 300 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 PDXDC1Q6P996 788 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 WDR49Q8IV35 697 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 CASP10Q92851 521 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 MTMR12Q9C0I1 747 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 CLSTN2Q9H4D0 955 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 MTRRQ9UBK8 725 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 SIX4Q9UIU6 781 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 PCDHB8Q9UN66 801 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 ADAM12O43184 909 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 CD44P16070 742 aaKnown RBP15.35■□□□□ 0.05
SHMT2-217ENST00000555116 PAX3P23760 479 aa15.35■□□□□ 0.05
SHMT2-217ENST00000555116 MRPL58Q14197 206 aaKnown RBP15.35■□□□□ 0.05
SHMT2-217ENST00000555116 VARS2Q5ST30 1063 aaKnown RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms