RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 RAD9BQ6WBX8 426 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 FAM43BQ6ZT52 329 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 IRF2BP1Q8IU81 584 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 SMAP1Q8IYB5 467 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 GPR161Q8N6U8 529 aaKnown RBP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 KIAA0895Q8NCT3 520 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 ZNF507Q8TCN5 953 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 RABGGTAQ92696 567 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 IGSF21Q96ID5 467 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 PCMTD1Q96MG8 357 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 NAPGQ99747 312 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 DUSP9Q99956 384 aaKnown RBP12.07□□□□□ -0.48
SHMT2-216ENST00000554975 TEKT3Q9BXF9 490 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 ADAMTS10Q9H324 1103 aa12.07□□□□□ -0.48
SHMT2-216ENST00000554975 MEIS3P2A8K0S8 358 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 NDUFA10O95299 355 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 PSAPP07602 524 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 MYBP10242 640 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 SRFP11831 508 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 IDEP14735 1019 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 H2AFXP16104 143 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-216ENST00000554975 RFX1P22670 979 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 ALDH7A1P49419 539 aaKnown RBP12.06□□□□□ -0.48
SHMT2-216ENST00000554975 SLC26A2P50443 739 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 NLRP11P59045 1033 aaKnown RBP12.06□□□□□ -0.48
SHMT2-216ENST00000554975 FAM193AP78312 1265 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 EHHADHQ08426 723 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 MCM6Q14566 821 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 ZNF484Q5JVG2 852 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 LRCH2Q5VUJ6 765 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 DDX53Q86TM3 631 aaKnown RBP12.06□□□□□ -0.48
SHMT2-216ENST00000554975 METTL13Q8N6R0 699 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 LINC01465Q8N7H1 131 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 CPLX3Q8WVH0 158 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 TSC1Q92574 1164 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 DDX12PQ92771 950 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 LPPQ93052 612 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 GJA10Q969M2 543 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 LENG9Q96B70 501 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 KLHL5Q96PQ7 755 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 PLIN2Q99541 437 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 DESI2Q9BSY9 194 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 NRDE2Q9H7Z3 1164 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 MRPL44Q9H9J2 332 aaKnown RBP12.06□□□□□ -0.48
SHMT2-216ENST00000554975 DNAJB4Q9UDY4 337 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 CDC23Q9UJX2 597 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 MAPK8IP1Q9UQF2 711 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 SIT1Q9Y3P8 196 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 PCDHA10Q9Y5I2 948 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 UBE4BO95155 1302 aa12.06□□□□□ -0.48
SHMT2-216ENST00000554975 A0A0U1RQF3 1178 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 TTC26A0AVF1 554 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 ANO9A1A5B4 782 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 MYMKA6NI61 221 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 SPDYE4A6NLX3 237 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 WDR64B1ANS9 1081 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 CSDE1O75534 798 aaKnown RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 SSBP05455 408 aaKnown RBP eCLIP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 KRT18P05783 430 aaKnown RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 GALTP07902 379 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 CNPP09543 421 aaKnown RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 ZSCAN20P17040 1043 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 GBP2P32456 591 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 POLGP54098 1239 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 FKBP3Q00688 224 aaKnown RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 CKAP4Q07065 602 aaKnown RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 STK4Q13043 487 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 EDRF1Q3B7T1 1238 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 VWA3BQ502W6 1294 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 VARS2Q5ST30 1063 aaKnown RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 IQCEQ6IPM2 695 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 PHLDB3Q6NSJ2 640 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 TMCO3Q6UWJ1 677 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 KIAA1328Q86T90 577 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 KRT222Q8N1A0 295 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 LRRC71Q8N4P6 559 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 PJA1Q8NG27 643 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 SLC5A5Q92911 643 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 RIT2Q99578 217 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 TTYH3Q9C0H2 523 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 GBP3Q9H0R5 595 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 ARHGEF3Q9NR81 526 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 NCDNQ9UBB6 729 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 GABBR1Q9UBS5 961 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 EPN1Q9Y6I3 576 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-216ENST00000554975 MYH11P35749 1972 aa12.05□□□□□ -0.48
SHMT2-216ENST00000554975 ARID2Q68CP9 1835 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 TDRD15B5MCY1 1934 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 EIF3CLB5ME19 914 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 EDIL3O43854 480 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 USO1O60763 962 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 LILRB3O75022 631 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 ADRB1P08588 477 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 TGM1P22735 817 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 EIF4BP23588 611 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 KLRC2P26717 231 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 HNRNPH3P31942 346 aaKnown RBP12.04□□□□□ -0.48
SHMT2-216ENST00000554975 SLC11A1P49279 550 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 JAK3P52333 1124 aa12.04□□□□□ -0.48
SHMT2-216ENST00000554975 PMS1P54277 932 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms