RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 MTMR3Q13615 1198 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 ADALQ6DHV7 355 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 STXBP4Q6ZWJ1 553 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 BEST2Q8NFU1 509 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 PANK2Q9BZ23 570 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 KCNH6Q9H252 994 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 TMEM206Q9H813 350 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 EPS15L1Q9UBC2 864 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 PCDHA7Q9UN72 937 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 ANK1P16157 1881 aa17.43■□□□□ 0.38
CCDC88C-209ENST00000554872 ANO9A1A5B4 782 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 TISP43B9A030 160 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 I3L4J1 428 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 KIAA0391O15091 583 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 OAZ2O95190 189 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 IL18RAPO95256 599 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 GCNT3O95395 438 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 SPATA31D3P0C874 917 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 IDEP14735 1019 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 MCM4P33991 863 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 ME1P48163 572 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 CASP5P51878 434 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 ROR1Q01973 937 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 EHHADHQ08426 723 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 KCNA1Q09470 495 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 TMEM132DQ14C87 1099 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 TPGS2Q68CL5 300 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 JADE1Q6IE81 842 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 ZNF280DQ6N043 979 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 CRELD2Q6UXH1 353 aaPredicted RBP17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 SPATA31D4Q6ZUB0 917 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 GLYCTKQ8IVS8 523 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 ZNF461Q8TAF7 563 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 POMGNT1Q8WZA1 660 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 NXPE3Q969Y0 559 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 ASIC4Q96FT7 647 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 C7orf25Q9BPX7 421 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 IGSF9Q9P2J2 1179 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 HCN4Q9Y3Q4 1203 aa17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 ZFP37Q9Y6Q3 630 aaPredicted RBP17.42■□□□□ 0.38
CCDC88C-209ENST00000554872 ARHGEF37A1IGU5 675 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 TMEM221A6NGB7 291 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 M0R296 226 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 EIF3DO15371 548 aaKnown RBP eCLIP17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 N4BP1O75113 896 aaKnown RBP17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 XYLBO75191 536 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 LDHAP00338 332 aaKnown RBP17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 MYBP10242 640 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 SP100P23497 879 aaPredicted RBP17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 DNM1Q05193 864 aaKnown RBP17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 PPM1LQ5SGD2 360 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 FOXD4L5Q5VV16 416 aaPredicted RBP17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 HFE2Q6ZVN8 426 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 TCEAL8Q8IYN2 117 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 FOXD4L4Q8WXT5 416 aaPredicted RBP17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 DHX58Q96C10 678 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 MFSD14AQ96MC6 490 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 AVENQ9NQS1 362 aaPredicted RBP17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 FAM13BQ9NYF5 915 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 UBE4BO95155 1302 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 ZNF318Q5VUA4 2279 aa17.41■□□□□ 0.38
CCDC88C-209ENST00000554872 DOCK8Q8NF50 2099 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 PIRO00625 290 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 POLR2DO15514 142 aaKnown RBP17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 NFICP08651 508 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 ATF2P15336 505 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 TYMPP19971 482 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 ACOT2P49753 483 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 SPAG1Q07617 926 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 EPM2AIP1Q7L775 607 aaPredicted RBP17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 BRSK2Q8IWQ3 736 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 SLC7A14Q8TBB6 771 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 FGFBP2Q9BYJ0 223 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 PIDD1Q9HB75 910 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 FBXL5Q9UKA1 691 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 ZDHHC9Q9Y397 364 aa17.4■□□□□ 0.38
CCDC88C-209ENST00000554872 PVALEFA0A1B0GWK0 134 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 WDR27A2RRH5 827 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 CYP11A1P05108 521 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 LILRA4P59901 499 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 YWHAHQ04917 246 aaPredicted RBP17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 CTXN3Q4LDR2 81 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 C9orf57Q5W0N0 161 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 UNC13DQ70J99 1090 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 IKZF4Q9H2S9 585 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 TBC1D7Q9P0N9 293 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 LIMD1Q9UGP4 676 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 KCNH3Q9ULD8 1083 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 ATP6V1DQ9Y5K8 247 aa17.39■□□□□ 0.37
CCDC88C-209ENST00000554872 FAM237AA0A1B0GTK4 181 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 OR6C75A6NL08 312 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 EXTL3O43909 919 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 SLFN14P0C7P3 912 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 SNRPFP62306 86 aaKnown RBP17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 ASIC1P78348 528 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 KRT85P78386 507 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 EFCAB13Q8IY85 973 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 SYCP3Q8IZU3 236 aa17.38■□□□□ 0.37
CCDC88C-209ENST00000554872 LEO1Q8WVC0 666 aaPredicted RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms