RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-204	ENST00000554660	GJB4	Q9NTQ9	266 aa		12.51	□□□□□ -0.41
VPS33B-204	ENST00000554660	HCFC1R1	Q9NWW0	138 aa		12.51	□□□□□ -0.41
VPS33B-204	ENST00000554660	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	12.51	□□□□□ -0.41
VPS33B-204	ENST00000554660	FAM205C	A6NFA0	338 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	FAM170B	A6NMN3	283 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	SPTLC1	O15269	473 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	MARCH6	O60337	910 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	KRT37	O76014	449 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	GCFC2	P16383	781 aa	Known RBP	12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	GLRA2	P23416	452 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	ZNF528	Q3MIS6	628 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	SLC44A4	Q53GD3	710 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	VARS2	Q5ST30	1063 aa	Known RBP	12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	FAM171A1	Q5VUB5	890 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	GALNT17	Q6IS24	598 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	TSSK4	Q6SA08	328 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	TPRG1	Q6ZUI0	275 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	FILIP1	Q7Z7B0	1213 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	NPAS3	Q8IXF0	933 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	GPR65	Q8IYL9	337 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	FAM177A1	Q8N128	213 aa	Predicted RBP	12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	LNX1	Q8TBB1	728 aa	Predicted RBP	12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	OXER1	Q8TDS5	423 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	ING5	Q8WYH8	240 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	PIK3R5	Q8WYR1	880 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	TTPAL	Q9BTX7	342 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	PHF20	Q9BVI0	1012 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	GTPBP4	Q9BZE4	634 aa	Known RBP	12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	CXCL16	Q9H2A7	254 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	LTB4R2	Q9NPC1	389 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	OGFR	Q9NZT2	677 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	IFNK	Q9P0W0	207 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	FBXO4	Q9UKT5	387 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	KCNH3	Q9ULD8	1083 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	SMG5	Q9UPR3	1016 aa	Known RBP	12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	PHLPP2	Q6ZVD8	1323 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	DOCK6	Q96HP0	2047 aa		12.5	□□□□□ -0.41
VPS33B-204	ENST00000554660	CACNA1I	Q9P0X4	2223 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	ZMYM2	Q9UBW7	1377 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	PTGES	O14684	152 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	TBX3	O15119	743 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	SMC2	O95347	1197 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	SLU7	O95391	586 aa	Known RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	HNRNPA1	P09651	372 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	TARS	P26639	723 aa	Known RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	ERCC5	P28715	1186 aa	Predicted RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	ARL2	P36404	184 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	PRKCQ	Q04759	706 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	TUSC3	Q13454	348 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	EARS2	Q5JPH6	523 aa	Known RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	CREBRF	Q8IUR6	639 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	VSTM4	Q8IW00	320 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	ZNF397	Q8NF99	534 aa	Predicted RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	SPATA20	Q8TB22	786 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	ENOX1	Q8TC92	643 aa	Known RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	CCDC43	Q96MW1	224 aa	Known RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	EIF2AK1	Q9BQI3	630 aa	Known RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	POLR3F	Q9H1D9	316 aa	Predicted RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	HSD3B7	Q9H2F3	369 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	GPRC5C	Q9NQ84	441 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	PCDHGA2	Q9Y5H1	932 aa		12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660	SRPRB	Q9Y5M8	271 aa	Known RBP	12.49	□□□□□ -0.41
VPS33B-204	ENST00000554660		A0A087WWV3	80 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660		A0A1B0GUA9	196 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	LRRIQ4	A6NIV6	560 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	TTLL13P	A6NNM8	815 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	USO1	O60763	962 aa	Known RBP	12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	XYLB	O75191	536 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	DGAT1	O75907	488 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	SLITRK3	O94933	977 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	HOXA9	P31269	272 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	POU5F1B	Q06416	359 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	PABPC1L	Q4VXU2	614 aa	Known RBP	12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	E4F1	Q66K89	784 aa	Predicted RBP	12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	ARMCX5	Q6P1M9	558 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	MAEA	Q7L5Y9	396 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	TMC6	Q7Z403	805 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	ZBTB44	Q8NCP5	570 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	ATRIP	Q8WXE1	791 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	NFKBIZ	Q9BYH8	718 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	DNMT3B	Q9UBC3	853 aa	Known RBP	12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	FBXO2	Q9UK22	296 aa	Predicted RBP	12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	VWA8	A3KMH1	1905 aa		12.48	□□□□□ -0.41
VPS33B-204	ENST00000554660	ARHGAP6	O43182	974 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	ZSCAN12	O43309	604 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	RECQL4	O94761	1208 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	IGFBP6	P24592	240 aa	Predicted RBP	12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	RARRES1	P49788	294 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	ATXN1	P54253	815 aa	Known RBP	12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	UBASH3A	P57075	661 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	PFKP	Q01813	784 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	NAB2	Q15742	525 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	SLC5A9	Q2M3M2	681 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	ZBTB41	Q5SVQ8	909 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	DIS3L2	Q8IYB7	885 aa	Known RBP	12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	PIGO	Q8TEQ8	1089 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	PPP1R13B	Q96KQ4	1090 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	OSBPL6	Q9BZF3	934 aa		12.47	□□□□□ -0.41
VPS33B-204	ENST00000554660	EPC1	Q9H2F5	836 aa		12.47	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms