RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RGS20O76081 388 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 VNN1O95497 513 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 ATP6V1G2O95670 118 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 HLA-DRAP01903 254 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 EDN1P05305 212 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 RDXP35241 583 aaKnown RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 MAP2K2P36507 400 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 PSMC4P43686 418 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 NSFP46459 744 aaKnown RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 JAK3P52333 1124 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 GSCP56915 257 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 MCCD1P59942 119 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 SNRPFP62306 86 aaKnown RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 KRT76Q01546 638 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 GCNT1Q02742 428 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 MTERF2Q49AM1 385 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 TMEM63BQ5T3F8 832 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 KAZNQ674X7 775 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 CGB2Q6NT52 195 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 CYP4F22Q6NT55 531 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 TMEM270Q6UE05 265 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 C15orf39Q6ZRI6 1047 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 MON1BQ7L1V2 547 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 CCDC91Q7Z6B0 441 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 SRRM1Q8IYB3 904 aaKnown RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 KIF2BQ8N4N8 673 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 SERPINB12Q96P63 405 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 NCAPGQ9BPX3 1015 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 ROPN1BQ9BZX4 212 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 ROPN1Q9HAT0 212 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 HOMER3Q9NSC5 361 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 TRIM33Q9UPN9 1127 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 NAALADL1Q9UQQ1 740 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 PCDHA10Q9Y5I2 948 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 LOC102724159A0A0B4J2E5 919 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 A8MUI8 341 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 PROSCO94903 275 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 GAS8O95995 478 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 ACO1P21399 889 aaKnown RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 SFNP31947 248 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 RPL7AP62424 266 aaKnown RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 GHRHRQ02643 423 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 CENPCQ03188 943 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 PWP2Q15269 919 aaKnown RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 PREPLQ4J6C6 727 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 IZUMO3Q5VZ72 239 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 CAPN12Q6ZSI9 719 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 NLRX1Q86UT6 975 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 FAM83AQ86UY5 434 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 SAMD3Q8N6K7 520 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 CCDC63Q8NA47 563 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 SUPT20HQ8NEM7 779 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 FLAD1Q8NFF5 587 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 ATL2Q8NHH9 583 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 ZNF526Q8TF50 670 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 TMEM143Q96AN5 459 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 RMDN2Q96LZ7 410 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 NTPCRQ9BSD7 190 aaKnown RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 TIPINQ9BVW5 301 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 PLVAPQ9BX97 442 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 OSBPL8Q9BZF1 889 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 FHDC1Q9C0D6 1143 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 STMN4Q9H169 189 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 POLR3FQ9H1D9 316 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 RPAP3Q9H6T3 665 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 KIF9Q9HAQ2 790 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 NOD2Q9HC29 1040 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 A1CFQ9NQ94 594 aaKnown RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 USP15Q9Y4E8 981 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-213ENST00000552720 SIP14410 1827 aa7.97□□□□□ -1.13
LIMA1-213ENST00000552720 SPAG7O75391 227 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 C4BPAP04003 597 aaKnown RBP7.96□□□□□ -1.13
LIMA1-213ENST00000552720 CYP1A1P04798 512 aaPredicted RBP7.96□□□□□ -1.13
LIMA1-213ENST00000552720 NR3C2P08235 984 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 KCNA2P16389 499 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 PIK3CAP42336 1068 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 LIG4P49917 911 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 NCALDP61601 193 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 NOMO3P69849 1222 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 PRKCEQ02156 737 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 MGAT5Q09328 741 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 MAMLD1Q13495 774 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 FASTKD3Q14CZ7 662 aaKnown RBP7.96□□□□□ -1.13
LIMA1-213ENST00000552720 P3H1Q32P28 736 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 ZACNQ401N2 412 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 ACCSLQ4AC99 568 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 FAM182AQ5T1J6 154 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 TXNRD3NBQ6F5E7 133 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 MIS18BP1Q6P0N0 1132 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 CRELD2Q6UXH1 353 aaPredicted RBP7.96□□□□□ -1.13
LIMA1-213ENST00000552720 CROCCP2Q86T23 111 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 VSIG10LQ86VR7 867 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 FITM2Q8N6M3 262 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 PRCCQ92733 491 aaPredicted RBP7.96□□□□□ -1.13
LIMA1-213ENST00000552720 P3H4Q92791 437 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 HAUS1Q96CS2 278 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 MRRFQ96E11 262 aaKnown RBP7.96□□□□□ -1.13
LIMA1-213ENST00000552720 TGS1Q96RS0 853 aaKnown RBP7.96□□□□□ -1.13
LIMA1-213ENST00000552720 TRAIPQ9BWF2 469 aa7.96□□□□□ -1.13
LIMA1-213ENST00000552720 NSRP1Q9H0G5 558 aaKnown RBP7.96□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms