RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 PALB2Q86YC2 1186 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 SCFD1Q8WVM8 642 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 ZNF707Q96C28 371 aaPredicted RBP12.41□□□□□ -0.42
YBX3-216ENST00000544622 CBWD1Q9BRT8 395 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 POMKQ9H5K3 350 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 EPHX3Q9H6B9 360 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 MAN1C1Q9NR34 630 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 XPOTO43592 962 aaKnown RBP12.4□□□□□ -0.42
YBX3-216ENST00000544622 MYL1P05976 194 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 NFICP08651 508 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 WEE2P0C1S8 567 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 SPATA31D3P0C874 917 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 MTHFRP42898 656 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 AFMP43652 599 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 ATAT1Q5SQI0 421 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 VARS2Q5ST30 1063 aaKnown RBP12.4□□□□□ -0.42
YBX3-216ENST00000544622 SPATA31D4Q6ZUB0 917 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 NT5DC4Q86YG4 428 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 RNF135Q8IUD6 432 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 EFCAB13Q8IY85 973 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 GRAMD1CQ8IYS0 662 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 CEP57L1Q8IYX8 460 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 CXorf38Q8TB03 319 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 TMEM174Q8WUU8 243 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 BORCS6Q96GS4 357 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 RIPOR3Q96MK2 946 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 GDPD2Q9HCC8 539 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 FBXW11Q9UKB1 542 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 USTQ9Y2C2 406 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 PLXNA3P51805 1871 aa12.4□□□□□ -0.42
YBX3-216ENST00000544622 TCHHQ07283 1943 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 CCDC195A0A1B0GUA6 201 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 PPEF2O14830 753 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 KIAA0391O15091 583 aaKnown RBP12.39□□□□□ -0.43
YBX3-216ENST00000544622 SPTLC1O15269 473 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 EXTL3O43909 919 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 RFPL2O75678 378 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 ABLIM3O94929 683 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 OAZ2O95190 189 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 SSTR3P32745 418 aaPredicted RBP12.39□□□□□ -0.43
YBX3-216ENST00000544622 OR1D2P34982 312 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 SYKP43405 635 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 GUCY2FP51841 1108 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 LILRA4P59901 499 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 STK4Q13043 487 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 TMEM132DQ14C87 1099 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 C9orf57Q5W0N0 161 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 STXBP4Q6ZWJ1 553 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 RTL10Q7L3V2 364 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 GLYCTKQ8IVS8 523 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 BRSK2Q8IWQ3 736 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 SYCP3Q8IZU3 236 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 KREMEN2Q8NCW0 462 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 ZNF461Q8TAF7 563 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 SAAL1Q96ER3 474 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 RPGRIP1Q96KN7 1286 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 FAM213AQ9BRX8 229 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 GOLPH3LQ9H4A5 285 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 C11orf16Q9NQ32 467 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 ZDHHC7Q9NXF8 308 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 PCDHB8Q9UN66 801 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 NUB1Q9Y5A7 615 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 CDY1Q9Y6F8 540 aa12.39□□□□□ -0.43
YBX3-216ENST00000544622 UBE4BO95155 1302 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 WDR27A2RRH5 827 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 ZMYND10O75800 440 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 IL18RAPO95256 599 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 PAX3P23760 479 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 HOXA9P31269 272 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 SNRPFP62306 86 aaKnown RBP12.38□□□□□ -0.43
YBX3-216ENST00000544622 PSMD2Q13200 908 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 UVSSAQ2YD98 709 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 ARMCX5Q6P1M9 558 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 C12orf56Q8IXR9 622 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 GPD1LQ8N335 351 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 KIAA0895Q8NCT3 520 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 BEST2Q8NFU1 509 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 FAM212AQ96EL1 285 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 PRKD2Q9BZL6 878 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 PCIF1Q9H4Z3 704 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 WDR6Q9NNW5 1121 aaKnown RBP12.38□□□□□ -0.43
YBX3-216ENST00000544622 SLC39A2Q9NP94 309 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 AGPAT3Q9NRZ7 376 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 FBXL5Q9UKA1 691 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 MTCL1Q9Y4B5 1905 aaKnown RBP12.38□□□□□ -0.43
YBX3-216ENST00000544622 ANK1P16157 1881 aa12.38□□□□□ -0.43
YBX3-216ENST00000544622 GOLGA8IPA6NC78 632 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 GOLGA8JA6NMD2 632 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 GPR37L1O60883 481 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 ZNF202O95125 648 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 POU2F2P09086 479 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 ALADP13716 330 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 ATF2P15336 505 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 TYMPP19971 482 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 MCM4P33991 863 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 ROR1Q01973 937 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 DPYDQ12882 1025 aa12.37□□□□□ -0.43
YBX3-216ENST00000544622 SNW1Q13573 536 aaKnown RBP12.37□□□□□ -0.43
YBX3-216ENST00000544622 KNOP1Q1ED39 458 aaKnown RBP12.37□□□□□ -0.43
YBX3-216ENST00000544622 KMT5BQ4FZB7 885 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms