RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SULF1Q8IWU6 871 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 KLHL7Q8IXQ5 586 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 MDM1Q8TC05 714 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 GIPC2Q8TF65 315 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 ZFPM2Q8WW38 1151 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 CCT6BQ92526 530 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 GPRASP2Q96D09 838 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 TSC22D3Q99576 134 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 ZHX3Q9H4I2 956 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 ACAD9Q9H845 621 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 CARD8Q9Y2G2 431 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 STK38LQ9Y2H1 464 aa8.51□□□□□ -1.05
PDLIM5-221ENST00000542407 SFI1A8K8P3 1242 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 AKR1B10O60218 316 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 PEX10O60683 326 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 TCP1P17987 556 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 HOXD12P35452 270 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 BYSLQ13895 437 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 NFIL3Q16649 462 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CCDC155Q8N6L0 562 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 LILRB1Q8NHL6 650 aaPredicted RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 UBLCP1Q8WVY7 318 aaPredicted RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CASKIN2Q8WXE0 1202 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CDCA5Q96FF9 252 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CLMNQ96JQ2 1002 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 VRTNQ9H8Y1 702 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 TMBIM4Q9HC24 238 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 GALNT8Q9NY28 637 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 BTBD7Q9P203 1132 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 ITGB1BP2Q9UKP3 347 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CORO1CQ9ULV4 474 aaPredicted RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 A0A0B4J203 849 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CCT8L1PA6NM43 557 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CNMDO75829 334 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 GNA14O95837 355 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 NMT1P30419 496 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 HNRNPH3P31942 346 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CTCFP49711 727 aaPredicted RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 MAGOHP61326 146 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 SH2D4BQ5SQS7 431 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CHADLQ6NUI6 762 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 DPY19L2P1Q6NXN4 242 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 FIP1L1Q6UN15 594 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 USP50Q70EL3 339 aaPredicted RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 KRT77Q7Z794 578 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 PCGF5Q86SE9 256 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 ANKS4BQ8N8V4 417 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CCDC197Q8NCU1 140 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 MAGOHBQ96A72 148 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 OSBPL1AQ9BXW6 950 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 IKZF4Q9H2S9 585 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 MRPL46Q9H2W6 279 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 ZWILCHQ9H900 591 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 PARVGQ9HBI0 331 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 TYW1Q9NV66 732 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 CNOT8Q9UFF9 292 aaKnown RBP8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 TTLL3Q9Y4R7 772 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 TELO2Q9Y4R8 837 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 ARID2Q68CP9 1835 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 WDR81Q562E7 1941 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 KIAA1217Q5T5P2 1943 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 UBE4BO95155 1302 aa8.5□□□□□ -1.05
PDLIM5-221ENST00000542407 SCN4AP35499 1836 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 DCDC2CA8MYV0 355 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 HGSO14964 777 aaPredicted RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 NOL4O94818 638 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 STBD1O95210 358 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 LINGO3P0C6S8 592 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 NR2F2P24468 414 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 QARSP47897 775 aaKnown RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 RARRES1P49788 294 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 PPATQ06203 517 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ADAM9Q13443 819 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 CFAP221Q4G0U5 840 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 LACTB2Q53H82 288 aaPredicted RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 MOB2Q70IA6 237 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ZNF720Q7Z2F6 126 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 NSUN6Q8TEA1 469 aaKnown RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 BAP1Q92560 729 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 USP6NLQ92738 828 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 IQCDQ96DY2 449 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 CDHR1Q96JP9 859 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 NAP1L3Q99457 506 aaPredicted RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 TAF1DQ9H5J8 278 aaPredicted RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 NRDE2Q9H7Z3 1164 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.49□□□□□ -1.054e-8■■■■□ 25.7
PDLIM5-221ENST00000542407 KCNH4Q9UQ05 1017 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 FAM13AO94988 1023 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 GCNT3O95395 438 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 PDGFRBP09619 1106 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ATP4AP20648 1035 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 JAK3P52333 1124 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 PPP2R2AP63151 447 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 KCNJ2P63252 427 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 MXRA7P84157 204 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 CDK17Q00537 523 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 KRT76Q01546 638 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 ZC2HC1CQ53FD0 456 aaPredicted RBP8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 PADI6Q6TGC4 694 aa8.49□□□□□ -1.05
PDLIM5-221ENST00000542407 TMEM151BQ8IW70 566 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms