RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 BEND6Q5SZJ8 279 aaPredicted RBP10.33□□□□□ -0.76
CLIP1-212ENST00000540304 LINC01465Q8N7H1 131 aa10.33□□□□□ -0.76
CLIP1-212ENST00000540304 NPLOC4Q8TAT6 608 aa10.33□□□□□ -0.76
CLIP1-212ENST00000540304 RUBCNQ92622 972 aa10.33□□□□□ -0.76
CLIP1-212ENST00000540304 SELENOOQ9BVL4 669 aa10.33□□□□□ -0.76
CLIP1-212ENST00000540304 PLEKHA4Q9H4M7 779 aa10.33□□□□□ -0.76
CLIP1-212ENST00000540304 RBM12Q9NTZ6 932 aaKnown RBP10.33□□□□□ -0.76
CLIP1-212ENST00000540304 AMFRQ9UKV5 643 aa10.33□□□□□ -0.76
CLIP1-212ENST00000540304 PCDHGA4Q9Y5G9 962 aa10.33□□□□□ -0.76
CLIP1-212ENST00000540304 EME2A4GXA9 379 aaPredicted RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 H3BRB1 525 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 CALCAP01258 141 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 MMP3P08254 477 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 HOXD8P13378 290 aaPredicted RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 TBXAS1P24557 533 aaPredicted RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 BPIFB4P59827 614 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 NOP14P78316 857 aaKnown RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 CUL2Q13617 745 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 NCOA4Q13772 614 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 IQSEC1Q6DN90 963 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 SPOPLQ6IQ16 392 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF677Q86XU0 584 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 GSPT2Q8IYD1 628 aaKnown RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 OR6J1Q8NGC5 347 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 HES6Q96HZ4 224 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 IMPG2Q9BZV3 1241 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 TUT1Q9H6E5 874 aaKnown RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 APOBEC3GQ9HC16 384 aaKnown RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 PRMT7Q9NVM4 692 aaPredicted RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 CTTNBP2NLQ9P2B4 639 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 CPA4Q9UI42 421 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 COG5Q9UP83 839 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 TNFSF13BQ9Y275 285 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 PCDHB2Q9Y5E7 798 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 ANK1P16157 1881 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 B4GALT5O43286 388 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 CLTAP09496 248 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 TMOD1P28289 359 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 RNASE9P60153 205 aaKnown RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 FAM187BQ17R55 369 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 ILDR2Q71H61 639 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 RASAL3Q86YV0 1011 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 ACTRT1Q8TDG2 376 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 FUT8Q9BYC5 575 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 MINDY3Q9H8M7 445 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 IFT122Q9HBG6 1241 aa10.32□□□□□ -0.76
CLIP1-212ENST00000540304 ZCCHC17Q9NP64 241 aaKnown RBP10.32□□□□□ -0.76
CLIP1-212ENST00000540304 MANSC4A6NHS7 340 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-212ENST00000540304 SASH3O75995 380 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 MTA2O94776 668 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 ITGBL1O95965 494 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-212ENST00000540304 ACO1P21399 889 aaKnown RBP10.31□□□□□ -0.76
CLIP1-212ENST00000540304 DGKDQ16760 1214 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 CLEC16AQ2KHT3 1053 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 GLE1Q53GS7 698 aaKnown RBP10.31□□□□□ -0.76
CLIP1-212ENST00000540304 ACAD10Q6JQN1 1059 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 C11orf63Q6NUN7 778 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 C8orf74Q6P047 294 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 MTHFD1LQ6UB35 978 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 USP38Q8NB14 1042 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 ARPC5LQ9BPX5 153 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 LRRC1Q9BTT6 524 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 NMRK2Q9NPI5 230 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 CHORDC1Q9UHD1 332 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-212ENST00000540304 AKT3Q9Y243 479 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 NUB1Q9Y5A7 615 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 CEP104O60308 925 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF157P51786 506 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-212ENST00000540304 PPFIA1Q13136 1202 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 DUOXA2Q1HG44 320 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 MORN1Q5T089 497 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 EEF1DP3Q658K8 133 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 HDXQ7Z353 690 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 THNSL1Q8IYQ7 743 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF483Q8TF39 744 aaPredicted RBP10.31□□□□□ -0.76
CLIP1-212ENST00000540304 MTMR12Q9C0I1 747 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 CDT1Q9H211 546 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 GTF3C4Q9UKN8 822 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 L1RE1Q9UN81 338 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 KAT6AQ92794 2004 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 MGAMO43451 1857 aa10.31□□□□□ -0.76
CLIP1-212ENST00000540304 A0A087WZ62 844 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 PGRMC1O00264 195 aaKnown RBP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 IGF2BP3O00425 579 aaKnown RBP eCLIP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 ZEB2O60315 1214 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 ASS1P00966 412 aaKnown RBP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 CYP1A2P05177 515 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 HOXC6P09630 235 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 IQCF3P0C7M6 154 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 CCNHP51946 323 aaPredicted RBP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 TNFAIP2Q03169 654 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 MAP2K5Q13163 448 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 IRF5Q13568 498 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 GRIK4Q16099 956 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 CHADLQ6NUI6 762 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 RASGEF1CQ8N431 466 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 ZNF653Q96CK0 615 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 GDAP1L1Q96MZ0 367 aa10.3□□□□□ -0.76
CLIP1-212ENST00000540304 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.3□□□□□ -0.76
CLIP1-212ENST00000540304 FDXACB1Q9BRP7 624 aaPredicted RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms