RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 KRT10P13645 584 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 CENPCQ03188 943 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 OVGP1Q12889 678 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 GRIK3Q13003 919 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 GPS1Q13098 491 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 PARP6Q2NL67 630 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 LIN9Q5TKA1 542 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 APBB1IPQ7Z5R6 666 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-237ENST00000539504 CCDC125Q86Z20 511 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 MCOLN2Q8IZK6 566 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 FAM198AQ9UFP1 575 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 MRPL11Q9Y3B7 192 aaKnown RBP11.93□□□□□ -0.5
SYNE1-237ENST00000539504 ZHX2Q9Y6X8 837 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 A0A0G2JND7 137 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 PIK3CDO00329 1044 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 ATP2A1O14983 1001 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 TCEA3O75764 348 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 PIAS1O75925 651 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 P4HBP07237 508 aaKnown RBP11.93□□□□□ -0.5
SYNE1-237ENST00000539504 YARSP54577 528 aaKnown RBP11.93□□□□□ -0.5
SYNE1-237ENST00000539504 NR1H3Q13133 447 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 MTM1Q13496 603 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 XKR9Q5GH70 373 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 LVRNQ6Q4G3 990 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 SH3BP5LQ7L8J4 393 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 ANKMY2Q8IV38 441 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 RHOT1Q8IXI2 618 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 CERKQ8TCT0 537 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 HELQQ8TDG4 1101 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 ZNF483Q8TF39 744 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-237ENST00000539504 C1orf112Q9NSG2 853 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 EXOC7Q9UPT5 735 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 ACTL7BQ9Y614 415 aa11.93□□□□□ -0.5
SYNE1-237ENST00000539504 TNRC6CQ9HCJ0 1690 aaKnown RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 GOLGA8RI6L899 631 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 TPBGLP0DKB5 382 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 TROVE2P10155 538 aaKnown RBP eCLIP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 SLC1A1P43005 524 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 ARSEP51690 589 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 JAG1P78504 1218 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 FASTKD3Q14CZ7 662 aaKnown RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 CCNG2Q16589 344 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 TMEM63BQ5T3F8 832 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 THEMIS2Q5TEJ8 643 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 NLRP9Q7RTR0 991 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 MTDHQ86UE4 582 aaKnown RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 SP8Q8IXZ3 490 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 DNAJC9Q8WXX5 260 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 MAML1Q92585 1016 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 TMEM8AQ9HCN3 771 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 DPPA5A6NC42 116 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 POTEJP0CG39 1038 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 ETS1P14921 441 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 ATP4AP20648 1035 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 PTDSS1P48651 473 aaKnown RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 SLC1A5Q15758 541 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 CEP128Q6ZU80 1094 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 USP37Q86T82 979 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 RIBC1Q8N443 379 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 TEX9Q8N6V9 391 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 SUPT20HQ8NEM7 779 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 ACER1Q8TDN7 264 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 PARD3BQ8TEW8 1205 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 DDX27Q96GQ7 796 aaKnown RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 CSRNP1Q96S65 589 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 IWS1Q96ST2 819 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 TSC22D3Q99576 134 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 FHDC1Q9C0D6 1143 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 TDRD3Q9H7E2 651 aaKnown RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 CFAP69A5D8W1 941 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 RARRES1P49788 294 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 TAS2R40P59535 323 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 NOP14P78316 857 aaKnown RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 AP1ARQ63HQ0 302 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 SV2AQ7L0J3 742 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 VPS52Q8N1B4 723 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 MCUR1Q96AQ8 359 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 FAM81BQ96LP2 452 aa11.92□□□□□ -0.5
SYNE1-237ENST00000539504 KLF6Q99612 283 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 SMG5Q9UPR3 1016 aaKnown RBP11.92□□□□□ -0.5
SYNE1-237ENST00000539504 MROH7Q68CQ1 1323 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 A0A1W2PPM1 405 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 EDF1O60869 148 aaKnown RBP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 GYS1P13807 737 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 PECAM1P16284 738 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 GM2AP17900 193 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 CNGA1P29973 690 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 PDIA2Q13087 525 aaKnown RBP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 BIRC2Q13490 618 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 ATP13A4Q4VNC1 1196 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 PLA2G4FQ68DD2 849 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 CDCA2Q69YH5 1023 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 TMEM154Q6P9G4 183 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 FBXO41Q8TF61 875 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 INPP5DQ92835 1189 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 STRA6Q9BX79 667 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 DENND2DQ9H6A0 471 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-237ENST00000539504 C10orf71Q711Q0 1435 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 DENND3A2RUS2 1198 aa11.91□□□□□ -0.5
SYNE1-237ENST00000539504 PROSCO94903 275 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms