RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 MYCP01106 439 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 ENO1P06733 434 aaKnown RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 CAPZA2P47755 286 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 ALDH18A1P54886 795 aaKnown RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 PDAP1Q13442 181 aaKnown RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 ANKRD40Q6AI12 368 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 RFX8Q6ZV50 586 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 C2orf69Q8N8R5 385 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 AMACRQ9UHK6 382 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 TSR3Q9UJK0 312 aaKnown RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 EMSYQ7Z589 1322 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 DFFAO00273 331 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 TRAPPC3O43617 180 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 RTN2O75298 545 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 KLHL2O95198 593 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 SCP2P22307 547 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 COPB2P35606 906 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 AASDHQ4L235 1098 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 C16orf89Q6UX73 402 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 CLEC4GQ6UXB4 293 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 RCOR2Q8IZ40 523 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 SCFD2Q8WU76 684 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 C18orf8Q96DM3 657 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 ZFP42Q96MM3 310 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 SLC30A1Q9Y6M5 507 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 KIF13AQ9H1H9 1805 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 SASH1O94885 1247 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 RALBP11234 206 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 ENO3P13929 434 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 CLK1P49759 484 aaKnown RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 GPSM2P81274 684 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 HAUS6Q7Z4H7 955 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 NUP93Q8N1F7 819 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 KIF12Q96FN5 646 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 AGPAT1Q99943 283 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 SYTL2Q9HCH5 934 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 SCN3BQ9NY72 215 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 UVRAGQ9P2Y5 699 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.17□□□□□ -0.62
CLIP1-209ENST00000537178 PITPNM2Q9BZ72 1349 aa11.17□□□□□ -0.62
CLIP1-209ENST00000537178 TMEM2Q9UHN6 1383 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 LRRIQ3A6PVS8 624 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 ADCY3O60266 1144 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 FKBP9O95302 570 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 ASMTLO95671 621 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 GUCA1CO95843 209 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 CASP1P29466 404 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 ANO4Q32M45 955 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 FKBP9P1Q75LS8 142 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 HDDC2Q7Z4H3 204 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 SETD3Q86TU7 594 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 ATXN7L3BQ96GX2 97 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 LATS2Q9NRM7 1088 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 CLCA2Q9UQC9 943 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 POTEFA5A3E0 1075 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 USP17L10C9JJH3 530 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 POTEIP0CG38 1075 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 MDH1P40925 334 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 SYTL3Q4VX76 610 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 POTEGQ6S5H5 508 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 POTEEQ6S8J3 1075 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 P3H2Q8IVL5 708 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 MASTLQ96GX5 879 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 PPP1R2P1Q96PQ5 205 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 LXNQ9BS40 222 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 MAP3K20Q9NYL2 800 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 NEDD4P46934 1319 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 PDXKO00764 312 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 NDUFS3O75489 264 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 SPAG6O75602 509 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 SRP72O76094 671 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 TRIM49P0CI25 452 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 TRIM49CP0CI26 452 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 ITIH2P19823 946 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 CRKP46108 304 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 EFL1Q7Z2Z2 1120 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 CNBD2Q96M20 576 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 QTRT2Q9H974 415 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 LIMA1Q9UHB6 759 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 UTYO14607 1347 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 STXBP3O00186 592 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 USP11P51784 963 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 GUCY1A3Q02108 690 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 EPHA7Q15375 998 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 MICU2Q8IYU8 434 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 VPS37AQ8NEZ2 397 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 SH3RF3Q8TEJ3 882 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 TMA16Q96EY4 203 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 MRPS26Q9BYN8 205 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 ALG13Q9NP73 1137 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 ARHGEF38Q9NXL2 777 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 HDAC6Q9UBN7 1215 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 ZC3H7BQ9UGR2 993 aaKnown RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 USP15Q9Y4E8 981 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-209ENST00000537178 ECM29Q5VYK3 1845 aa11.16□□□□□ -0.62
CLIP1-209ENST00000537178 SMAPO00193 183 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 KCNN4O15554 427 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 LZTS3O60299 673 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-209ENST00000537178 MCAMP43121 646 aa11.15□□□□□ -0.62
CLIP1-209ENST00000537178 RGS4P49798 205 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms