RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 NSUN3Q9H649 340 aaKnown RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 TTC12Q9H892 705 aaPredicted RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 C12orf10Q9HB07 376 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 CYP4F11Q9HBI6 524 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 CD93Q9NPY3 652 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 KLHL14Q9P2G3 628 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 CRNNQ9UBG3 495 aaPredicted RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 IP6K2Q9UHH9 426 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 DNAI1Q9UI46 699 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 ATPIF1Q9UII2 106 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 R3HDM2Q9Y2K5 976 aaKnown RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 X6R8D5 127 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 CASZ1Q86V15 1759 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 KIF14Q15058 1648 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 EPRSP07814 1512 aaKnown RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 ANKRD50Q9ULJ7 1429 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 A0A0B4J203 849 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 TCRBV16S1A1N1A0A5B0 115 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 C19orf81C9J6K1 198 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 ARVCFO00192 962 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 IFRD1O00458 451 aaPredicted RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 YKT6O15498 198 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 AKR1B10O60218 316 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 TADA3O75528 432 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 B3GALNT1O75752 331 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 SRGAP2CP0DJJ0 459 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 GNAT1P11488 350 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 ATF7P17544 494 aaPredicted RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 ARL4AP40617 200 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 CLCN2P51788 898 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 KPNA1P52294 538 aaPredicted RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 GEMIN4P57678 1058 aaKnown RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 MECOMQ03112 1051 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 MRPL28Q13084 256 aaKnown RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 XRCC4Q13426 336 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 NFE2L1Q14494 772 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 MLANAQ16655 118 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 KIZQ2M2Z5 673 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 PLEKHN1Q494U1 663 aaPredicted RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 ARHGAP29Q52LW3 1261 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 FNDC3BQ53EP0 1204 aaKnown RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 PLEKHG4Q58EX7 1191 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 DALRD3Q5D0E6 543 aaKnown RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 IL23RQ5VWK5 629 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 CCDC62Q6P9F0 684 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 TUBA3EQ6PEY2 450 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 FIP1L1Q6UN15 594 aaKnown RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 DGLUCYQ7Z3D6 616 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 MRPL10Q7Z7H8 261 aaKnown RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 PHLDB2Q86SQ0 1253 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 ZNF605Q86T29 641 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 TNIP2Q8NFZ5 429 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 PCDH19Q8TAB3 1148 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 EFHD2Q96C19 240 aaPredicted RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 C1orf74Q96LT6 269 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 NR1H4Q96RI1 486 aaPredicted RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 BPIFA3Q9BQP9 254 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 ABCG4Q9H172 646 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 SMARCAD1Q9H4L7 1026 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 BRD9Q9H8M2 597 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 GPR108Q9NPR9 543 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 TCEAL9Q9UHQ7 104 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 RAB21Q9UL25 225 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 EXOC6BQ9Y2D4 811 aa5.94□□□□□ -1.46
CD44-236ENST00000533222 TNPO3Q9Y5L0 923 aaKnown RBP5.94□□□□□ -1.46
CD44-236ENST00000533222 SYNJ1O43426 1573 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 OR14I1A6ND48 311 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 H7BY64 318 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 KCNQ2O43526 872 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 ORC4O43929 436 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 BAG3O95817 575 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 ZFYP08048 801 aaPredicted RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 TOP1P11387 765 aaKnown RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 PCP11498 1178 aaKnown RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 COL6A2P12110 1019 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 PORP16435 677 aaPredicted RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 HSPA4P34932 840 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 MLH1P40692 756 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 GTF2A2P52657 109 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 KIF11P52732 1056 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 RARSP54136 660 aaKnown RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 GSDMDP57764 484 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 GPSM2P81274 684 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 DMPKQ09013 629 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 GRSF1Q12849 480 aaKnown RBP eCLIP5.93□□□□□ -1.46
CD44-236ENST00000533222 IDI1Q13907 227 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 ACAP1Q15027 740 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 WDR43Q15061 677 aaKnown RBP eCLIP5.93□□□□□ -1.46
CD44-236ENST00000533222 PPP2R5BQ15173 497 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 TPD52L1Q16890 204 aaPredicted RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 CFAP100Q494V2 611 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 PDCD4Q53EL6 469 aaKnown RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 ZBTB41Q5SVQ8 909 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 ARMC3Q5W041 872 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 TWF2Q6IBS0 349 aaKnown RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 CCDC121Q6ZUS5 278 aa5.93□□□□□ -1.46
CD44-236ENST00000533222 INTS8Q75QN2 995 aaKnown RBP5.93□□□□□ -1.46
CD44-236ENST00000533222 IRF2BP1Q8IU81 584 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms