RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	CCDC136	Q96JN2	1154 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	PHACTR3	Q96KR7	559 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	TMEM60	Q9H2L4	133 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	FAM204A	Q9H8W3	233 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	KLHL11	Q9NVR0	708 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	PNPO	Q9NVS9	261 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	TRPM5	Q9NZQ8	1165 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	ZDHHC8	Q9ULC8	765 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	ATP11B	Q9Y2G3	1177 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	MARCH11	A6NNE9	402 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	AHRR	A9YTQ3	701 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	RNASET2	O00584	256 aa	Known RBP	4.85	□□□□□ -1.63
CD44-233	ENST00000531141	FAM20B	O75063	409 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	RPS6KA4	O75676	772 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	C1S	P09871	688 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	AGFG1	P52594	562 aa	Known RBP	4.85	□□□□□ -1.63
CD44-233	ENST00000531141	MXRA7	P84157	204 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	SLFN5	Q08AF3	891 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	PLS1	Q14651	629 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	ANO6	Q4KMQ2	910 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	PDCD4	Q53EL6	469 aa	Known RBP	4.85	□□□□□ -1.63
CD44-233	ENST00000531141	SPRED1	Q7Z699	444 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	ZNF276	Q8N554	614 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	TBC1D15	Q8TC07	691 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	SLC25A43	Q8WUT9	341 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-233	ENST00000531141	PLEKHG4B	Q96PX9	1271 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	B3GNT5	Q9BYG0	378 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	GSTO2	Q9H4Y5	243 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	OBP2A	Q9NY56	170 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141	USP15	Q9Y4E8	981 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-233	ENST00000531141	FPGT-TNNI3K	V9GXZ4	949 aa		4.85	□□□□□ -1.63
CD44-233	ENST00000531141		H3BUI4	141 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	ZNF185	O15231	689 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	MATN3	O15232	486 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	MARCH6	O60337	910 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	AGFG2	O95081	481 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	MATN4	O95460	622 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	CHEK2	O96017	543 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	HLA-DOA	P06340	250 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	RARB	P10826	455 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	CKB	P12277	381 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	FCER1A	P12319	257 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	PTGS2	P35354	604 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	SLC25A3	Q00325	362 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	FOXE3	Q13461	319 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	TUBA3C	Q13748	450 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	KIF22	Q14807	665 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	UTP14C	Q5TAP6	766 aa	Known RBP	4.84	□□□□□ -1.63
CD44-233	ENST00000531141	EMC10	Q5UCC4	262 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	ARMC6	Q6NXE6	501 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	TUBA3E	Q6PEY2	450 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	LRRC55	Q6ZSA7	311 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	SRGAP1	Q7Z6B7	1085 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	C14orf80	Q86SX3	495 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	SYNE4	Q8N205	404 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	ZNF503	Q96F45	646 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	MED15	Q96RN5	788 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	PNKP	Q96T60	521 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	LRFN3	Q9BTN0	628 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	C1orf43	Q9BWL3	253 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	MRPL46	Q9H2W6	279 aa	Known RBP	4.84	□□□□□ -1.63
CD44-233	ENST00000531141	BRD9	Q9H8M2	597 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	SARS2	Q9NP81	518 aa	Known RBP	4.84	□□□□□ -1.63
CD44-233	ENST00000531141	CNNM1	Q9NRU3	951 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	RNF181	Q9P0P0	153 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141	KCNE5	Q9UJ90	142 aa		4.84	□□□□□ -1.63
CD44-233	ENST00000531141		A0A088AWK7	358 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141		A0A1B0GTW7	788 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	CAPN8	A6NHC0	703 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	KIF3B	O15066	747 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	NCR1	O76036	304 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	GNAI2	P04899	355 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	CFI	P05156	583 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	GJB1	P08034	283 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	FGFR4	P22455	802 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	NOMO3	P69849	1222 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	GPSM2	P81274	684 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	OCA2	Q04671	838 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	FGL2	Q14314	439 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	GRM3	Q14832	879 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	BEAN1	Q3B7T3	259 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	NOMO2	Q5JPE7	1267 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	CCDC181	Q5TID7	509 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	TSHZ3	Q63HK5	1081 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	PPP1R3B	Q86XI6	285 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	DGKH	Q86XP1	1220 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	MAPKAPK5	Q8IW41	473 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	SH2D3C	Q8N5H7	860 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	TMIE	Q8NEW7	156 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	PLBD2	Q8NHP8	589 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	DDX17	Q92841	729 aa	Known RBP	4.83	□□□□□ -1.64
CD44-233	ENST00000531141	SCAMP4	Q969E2	229 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	LENG9	Q96B70	501 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	KLHL32	Q96NJ5	620 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	SIK2	Q9H0K1	926 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	VPS11	Q9H270	941 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	GPR35	Q9HC97	309 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	AKIP1	Q9NQ31	210 aa		4.83	□□□□□ -1.64
CD44-233	ENST00000531141	DDX20	Q9UHI6	824 aa	Known RBP	4.83	□□□□□ -1.64
CD44-233	ENST00000531141	CDYL	Q9Y232	598 aa		4.83	□□□□□ -1.64

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