RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 VSTM5A8MXK1 200 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 H3BUI4 141 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 AGFG2O95081 481 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 PEX11BO96011 259 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 GOLGA6DP0CG33 693 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 SLFN5Q08AF3 891 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 GFOD2Q3B7J2 385 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 ARHGAP29Q52LW3 1261 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 CCDC157Q569K6 752 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 LRRC55Q6ZSA7 311 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 PPP1R3BQ86XI6 285 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 NUP133Q8WUM0 1156 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 SLC35A4Q96G79 324 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 MARS2Q96GW9 593 aaKnown RBP5.57□□□□□ -1.52
CD44-215ENST00000525241 ZNF747Q9BV97 191 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 C1orf112Q9NSG2 853 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 GNL3LQ9NVN8 582 aaKnown RBP5.57□□□□□ -1.52
CD44-215ENST00000525241 GOLGA6AQ9NYA3 693 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 DDX20Q9UHI6 824 aaKnown RBP5.57□□□□□ -1.52
CD44-215ENST00000525241 FEZ2Q9UHY8 353 aaPredicted RBP5.57□□□□□ -1.52
CD44-215ENST00000525241 ATP11BQ9Y2G3 1177 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 PCDHA1Q9Y5I3 950 aa5.57□□□□□ -1.52
CD44-215ENST00000525241 A0A1B0GTW7 788 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 GAGE12BA1L429 117 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 GAGE12HA6NDE8 117 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 A6NNZ2 444 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 RNASET2O00584 256 aaKnown RBP5.56□□□□□ -1.52
CD44-215ENST00000525241 NCR1O76036 304 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 MATN4O95460 622 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 ELANEP08246 267 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 FCER1AP12319 257 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 ATF3P18847 181 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 TNFRSF1AP19438 455 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 PIK3CGP48736 1102 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 AGFG1P52594 562 aaKnown RBP5.56□□□□□ -1.52
CD44-215ENST00000525241 RAB1AP62820 205 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 TUBA3CQ13748 450 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 PUM1Q14671 1186 aaKnown RBP eCLIP5.56□□□□□ -1.52
CD44-215ENST00000525241 FNDC7Q5VTL7 733 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 TUBA3EQ6PEY2 450 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 GGNQ86UU5 652 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 SLC25A43Q8WUT9 341 aaPredicted RBP5.56□□□□□ -1.52
CD44-215ENST00000525241 KLHL32Q96NJ5 620 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 KRTAP9-3Q9BYQ3 159 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 REXO4Q9GZR2 422 aaKnown RBP5.56□□□□□ -1.52
CD44-215ENST00000525241 TMEM60Q9H2L4 133 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 ARMT1Q9H993 441 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 AKIP1Q9NQ31 210 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 OBP2AQ9NY56 170 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 GPRC5BQ9NZH0 403 aa5.56□□□□□ -1.52
CD44-215ENST00000525241 MARCH11A6NNE9 402 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 MARCH6O60337 910 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 AHSGP02765 367 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 GJB1P08034 283 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 SPATA31D3P0C874 917 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 FGFR4P22455 802 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 OCA2Q04671 838 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 GBX1Q14549 363 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 KIF22Q14807 665 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 GRM3Q14832 879 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 LSM12Q3MHD2 195 aaKnown RBP5.55□□□□□ -1.52
CD44-215ENST00000525241 ANO6Q4KMQ2 910 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 NPNTQ6UXI9 565 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 SPATA31D4Q6ZUB0 917 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 PDSS2Q86YH6 399 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 MAPKAPK5Q8IW41 473 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 TMIEQ8NEW7 156 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 ZSWIM1Q9BR11 485 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 TLR10Q9BXR5 811 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 VPS11Q9H270 941 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 RNPEPQ9H4A4 650 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 BRD9Q9H8M2 597 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 SLC2A4RGQ9NR83 387 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 RLIMQ9NVW2 624 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 VSX1Q9NZR4 365 aaPredicted RBP5.55□□□□□ -1.52
CD44-215ENST00000525241 HSFX1Q9UBD0 423 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 DKK2Q9UBU2 259 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 USP25Q9UHP3 1055 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 ZDHHC8Q9ULC8 765 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 FPGT-TNNI3KV9GXZ4 949 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 AATKQ6ZMQ8 1374 aa5.55□□□□□ -1.52
CD44-215ENST00000525241 ANXA1P04083 346 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 CFIP05156 583 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 HMGB1P09429 215 aaKnown RBP5.54□□□□□ -1.52
CD44-215ENST00000525241 PHKA1P46020 1223 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 FGL2Q14314 439 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 BEAN1Q3B7T3 259 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 B3GNTL1Q67FW5 361 aaPredicted RBP5.54□□□□□ -1.52
CD44-215ENST00000525241 IGFL4Q6B9Z1 124 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 CYB5RLQ6IPT4 315 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 CRIP3Q6Q6R5 217 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 RHOUQ7L0Q8 258 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 CHST15Q7LFX5 561 aaPredicted RBP5.54□□□□□ -1.52
CD44-215ENST00000525241 DAAM2Q86T65 1068 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 COL23A1Q86Y22 540 aaPredicted RBP5.54□□□□□ -1.52
CD44-215ENST00000525241 KIAA0319LQ8IZA0 1049 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 TMEM132CQ8N3T6 1108 aa5.54□□□□□ -1.52
CD44-215ENST00000525241 CELF5Q8N6W0 485 aaKnown RBP5.54□□□□□ -1.52
CD44-215ENST00000525241 TNPO1Q92973 898 aaKnown RBP5.54□□□□□ -1.52
CD44-215ENST00000525241 LENG9Q96B70 501 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms