RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 NUMBLQ9Y6R0 609 aa19.03■□□□□ 0.64
DDX41-217ENST00000515562 LRG1P02750 347 aa19.02■□□□□ 0.64
DDX41-217ENST00000515562 ENOX2Q16206 610 aaKnown RBP19.02■□□□□ 0.64
DDX41-217ENST00000515562 SPECC1Q5M775 1068 aa19.02■□□□□ 0.64
DDX41-217ENST00000515562 TPGS2Q68CL5 300 aa19.02■□□□□ 0.64
DDX41-217ENST00000515562 USP49Q70CQ1 688 aa19.02■□□□□ 0.64
DDX41-217ENST00000515562 CD302Q8IX05 232 aa19.02■□□□□ 0.64
DDX41-217ENST00000515562 DDX12PQ92771 950 aa19.02■□□□□ 0.64
DDX41-217ENST00000515562 HVCN1Q96D96 273 aa19.02■□□□□ 0.64
DDX41-217ENST00000515562 OXCT2Q9BYC2 517 aaPredicted RBP19.02■□□□□ 0.64
DDX41-217ENST00000515562 ZSCAN16Q9H4T2 348 aaPredicted RBP19.02■□□□□ 0.64
DDX41-217ENST00000515562 SEL1LQ9UBV2 794 aa19.02■□□□□ 0.64
DDX41-217ENST00000515562 M0QZQ0 153 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 ADRB2P07550 413 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 NPR3P17342 541 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 RFX1P22670 979 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 NMT1P30419 496 aaKnown RBP19.01■□□□□ 0.63
DDX41-217ENST00000515562 ARPP19P56211 112 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 SPAG1Q07617 926 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 ZBTB6Q15916 424 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 ZBTB41Q5SVQ8 909 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 RRAGBQ5VZM2 374 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 SLC39A4Q6P5W5 647 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 TCEAL8Q8IYN2 117 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 RTP3Q9BQQ7 232 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 SLC2A4RGQ9NR83 387 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 HCFC1R1Q9NWW0 138 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 DNMT3BQ9UBC3 853 aaKnown RBP19.01■□□□□ 0.63
DDX41-217ENST00000515562 CPSF3Q9UKF6 684 aaKnown RBP19.01■□□□□ 0.63
DDX41-217ENST00000515562 MAFFQ9ULX9 164 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 MTMR6Q9Y217 621 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 DOCK6Q96HP0 2047 aa19.01■□□□□ 0.63
DDX41-217ENST00000515562 LACTBL1A8MY62 500 aa19■□□□□ 0.63
DDX41-217ENST00000515562 STX6O43752 255 aa19■□□□□ 0.63
DDX41-217ENST00000515562 AARSP49588 968 aaKnown RBP eCLIP19■□□□□ 0.634e-6■■□□□ 13.1
DDX41-217ENST00000515562 CEBPZQ03701 1054 aaKnown RBP19■□□□□ 0.63
DDX41-217ENST00000515562 YWHAHQ04917 246 aaPredicted RBP19■□□□□ 0.63
DDX41-217ENST00000515562 SLFN12LQ6IEE8 588 aa19■□□□□ 0.63
DDX41-217ENST00000515562 FAM173BQ6P4H8 233 aa19■□□□□ 0.63
DDX41-217ENST00000515562 CCDC73Q6ZRK6 1079 aa19■□□□□ 0.63
DDX41-217ENST00000515562 NPAS3Q8IXF0 933 aa19■□□□□ 0.63
DDX41-217ENST00000515562 BEST2Q8NFU1 509 aa19■□□□□ 0.63
DDX41-217ENST00000515562 ITFG1Q8TB96 612 aa19■□□□□ 0.63
DDX41-217ENST00000515562 ATOH1Q92858 354 aaPredicted RBP19■□□□□ 0.63
DDX41-217ENST00000515562 FGF14Q92915 247 aa19■□□□□ 0.63
DDX41-217ENST00000515562 CLIC6Q96NY7 704 aa19■□□□□ 0.63
DDX41-217ENST00000515562 CYP4F11Q9HBI6 524 aa19■□□□□ 0.63
DDX41-217ENST00000515562 AVENQ9NQS1 362 aaPredicted RBP19■□□□□ 0.63
DDX41-217ENST00000515562 AFF4Q9UHB7 1163 aaKnown RBP19■□□□□ 0.63
DDX41-217ENST00000515562 DERAQ9Y315 318 aa19■□□□□ 0.63
DDX41-217ENST00000515562 INSL5Q9Y5Q6 135 aa19■□□□□ 0.63
DDX41-217ENST00000515562 RHOP08100 348 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 CPB1P15086 417 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 GAP43P17677 238 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 PAX3P23760 479 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 SLC39A14Q15043 492 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 ZC2HC1CQ53FD0 456 aaPredicted RBP18.99■□□□□ 0.63
DDX41-217ENST00000515562 SPATA1Q5VX52 437 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 ADALQ6DHV7 355 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 PARM1Q6UWI2 310 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 SV2BQ7L1I2 683 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 DYMQ7RTS9 669 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 SFR1Q86XK3 245 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 GPR152Q8TDT2 470 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 USP28Q96RU2 1077 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 PHOX2BQ99453 314 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 ARHGEF3Q9NR81 526 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 GDE1Q9NZC3 331 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 CA14Q9ULX7 337 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 MRPS23Q9Y3D9 190 aaKnown RBP18.99■□□□□ 0.63
DDX41-217ENST00000515562 MYH15Q9Y2K3 1946 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 CACNA1HO95180 2353 aa18.99■□□□□ 0.63
DDX41-217ENST00000515562 NOTCH4Q99466 2003 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 KRBA1A5PL33 1030 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 H0Y858 1186 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 OAZ2O95190 189 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 PTPN2P17706 415 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 STAT6P42226 847 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 POU5F1Q01860 360 aaKnown RBP18.98■□□□□ 0.63
DDX41-217ENST00000515562 TMEM132DQ14C87 1099 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 JADE1Q6IE81 842 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 ZNF720Q7Z2F6 126 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 USP37Q86T82 979 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 ELMOD1Q8N336 334 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 FAM212AQ96EL1 285 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 ASB7Q9H672 318 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 MRPL44Q9H9J2 332 aaKnown RBP18.98■□□□□ 0.63
DDX41-217ENST00000515562 FAM86C1Q9NVL1 165 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 STYXL1Q9Y6J8 313 aa18.98■□□□□ 0.63
DDX41-217ENST00000515562 MYMKA6NI61 221 aa18.97■□□□□ 0.63
DDX41-217ENST00000515562 STK25O00506 426 aa18.97■□□□□ 0.63
DDX41-217ENST00000515562 PPP1R37O75864 691 aa18.97■□□□□ 0.63
DDX41-217ENST00000515562 SEC24AO95486 1093 aa18.97■□□□□ 0.63
DDX41-217ENST00000515562 NFICP08651 508 aa18.97■□□□□ 0.63
DDX41-217ENST00000515562 NASPP49321 788 aaPredicted RBP18.97■□□□□ 0.63
DDX41-217ENST00000515562 GUCY2FP51841 1108 aa18.97■□□□□ 0.63
DDX41-217ENST00000515562 ADCY1Q08828 1119 aa18.97■□□□□ 0.63
DDX41-217ENST00000515562 SLC5A9Q2M3M2 681 aa18.97■□□□□ 0.63
DDX41-217ENST00000515562 PHLDB3Q6NSJ2 640 aa18.97■□□□□ 0.63
DDX41-217ENST00000515562 DSTYKQ6XUX3 929 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms