RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 MYO1FO00160 1098 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 GPR42O15529 346 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 PRICKLE3O43900 615 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 MATN4O95460 622 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 GJB1P08034 283 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 HDCP19113 662 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 SLC6A4P31645 630 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 PHKA1P46020 1223 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 KCNJ5P48544 419 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 SOX8P57073 446 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 NOMO3P69849 1222 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 FMO1Q01740 532 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 EXOSC9Q06265 439 aaKnown RBP5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 KIF22Q14807 665 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 CNGA2Q16280 664 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 CSRP2Q16527 193 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 LONRF1Q17RB8 773 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 UTP14CQ5TAP6 766 aaKnown RBP5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 ZNF365Q70YC5 407 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 SGMS1Q86VZ5 419 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 FITM2Q8N6M3 262 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 RNF169Q8NCN4 708 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 OR52N2Q8NGI0 321 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 KBTBD7Q8WVZ9 684 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 ATXN2LQ8WWM7 1075 aaKnown RBP5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 MIEF2Q96C03 454 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 SUCLG2Q96I99 432 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 TEPSINQ96N21 525 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 MYD88Q99836 296 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 CPEB1Q9BZB8 566 aaKnown RBP5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 BTBD1Q9H0C5 482 aa5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.03□□□□□ -1.6
HMGB1P28-201ENST00000507778 DRGXA6NNA5 263 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 FOXN3O00409 490 aaPredicted RBP5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 TBX3O15119 743 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 ANXA1P04083 346 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 GNAI2P04899 355 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 BRAFP15056 766 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 HK1P19367 917 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 PIK3CBP42338 1070 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 ALDH5A1P51649 535 aaPredicted RBP5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 SUMO3P55854 103 aaPredicted RBP5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 HABP2Q14520 560 aaPredicted RBP5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 VPS72Q15906 364 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 DCAF17Q5H9S7 520 aaPredicted RBP5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 MED25Q71SY5 747 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 SRLQ86TD4 932 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 PDSS2Q86YH6 399 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 FAM186BQ8IYM0 893 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 MB21D1Q8N884 522 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 TBC1D15Q8TC07 691 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 GJA10Q969M2 543 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 FAM89AQ96GI7 184 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 PSMD1Q99460 953 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 P2RX7Q99572 595 aaKnown RBP5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 NLRC4Q9NPP4 1024 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 CPNE7Q9UBL6 633 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 SLC45A2Q9UMX9 530 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 SNX13Q9Y5W8 968 aa5.02□□□□□ -1.61
HMGB1P28-201ENST00000507778 KRTAP4-8A0A0G2JLE6 195 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 CDHR4A6H8M9 788 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 CAPN14A8MX76 684 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 PATE3B3GLJ2 98 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 TBC1D4O60343 1298 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 AGFG2O95081 481 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 RARBP10826 455 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 EN2P19622 333 aaPredicted RBP5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 COMTP21964 271 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 SLC6A2P23975 617 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 HTR3AP46098 478 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 ARFIP2P53365 341 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 PSMC1P62191 440 aaKnown RBP5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 MORC3Q14149 939 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 SPTY2D1Q68D10 685 aaPredicted RBP5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 DPP9Q86TI2 863 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 MORC1Q86VD1 984 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 ACRBPQ8NEB7 543 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 OR10H5Q8NGA6 315 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 OR6B3Q8NGW1 331 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 PGBD4Q96DM1 585 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 PHACTR3Q96KR7 559 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 CCDC138Q96M89 665 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 SSBP3Q9BWW4 388 aaPredicted RBP5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 TRIM54Q9BYV2 358 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 CORO2BQ9UQ03 480 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 MED16Q9Y2X0 877 aa5.01□□□□□ -1.61
HMGB1P28-201ENST00000507778 ZNF785A8K8V0 405 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 BTN3A1O00481 513 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 CYP27B1O15528 508 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 TPD52L2O43399 206 aaKnown RBP5□□□□□ -1.61
HMGB1P28-201ENST00000507778 ZNF623O75123 536 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 ITGB3P05106 788 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 ITGB1P05556 798 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 THP07101 528 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 ZKSCAN1P17029 563 aaPredicted RBP5□□□□□ -1.61
HMGB1P28-201ENST00000507778 TM4SF4P48230 202 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 PRIM2P49643 509 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 CHN2P52757 468 aa5□□□□□ -1.61
HMGB1P28-201ENST00000507778 HS1BP3Q53T59 392 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms