RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 GET4Q7L5D6 327 aaPredicted RBP19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 LARP4BQ92615 738 aaKnown RBP19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 BLOC1S4Q9NUP1 217 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 MTRRQ9UBK8 725 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 SERTAD1Q9UHV2 236 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 POLIQ9UNA4 740 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 CDY1Q9Y6F8 540 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 MYH11P35749 1972 aa19.6■□□□□ 0.73
SQSTM1-209ENST00000504627 TRIP11Q15643 1979 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 SYCE3A1L190 88 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 HNRNPDLO14979 420 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 XYLBO75191 536 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 HNRNPA1P09651 372 aaKnown RBP eCLIP19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 SCP2P22307 547 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 HOXD11P31277 338 aaPredicted RBP19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 RPL9P32969 192 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 VCPP55072 806 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 NHLH1Q02575 133 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 RAB33AQ14088 237 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 CD300LGQ6UXG3 332 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 GRASPQ7Z6J2 395 aaPredicted RBP19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 SLC7A14Q8TBB6 771 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 LRRC15Q8TF66 581 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 C18orf25Q96B23 403 aaPredicted RBP19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 MYADMQ96S97 322 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 FBXL21Q9UKT6 434 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 TBX20Q9UMR3 447 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 BACE2Q9Y5Z0 518 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 WDFY4Q6ZS81 3184 aa19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 MTCL1Q9Y4B5 1905 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-209ENST00000504627 PAPLNO95428 1278 aa19.58■□□□□ 0.72
SQSTM1-209ENST00000504627 MYL1P05976 194 aa19.58■□□□□ 0.72
SQSTM1-209ENST00000504627 CLTAP09496 248 aa19.58■□□□□ 0.72
SQSTM1-209ENST00000504627 PTPN5P54829 565 aa19.58■□□□□ 0.72
SQSTM1-209ENST00000504627 POSTNQ15063 836 aa19.58■□□□□ 0.72
SQSTM1-209ENST00000504627 SLC10A6Q3KNW5 377 aa19.58■□□□□ 0.72
SQSTM1-209ENST00000504627 PANK2Q9BZ23 570 aa19.58■□□□□ 0.72
SQSTM1-209ENST00000504627 EPS15L1Q9UBC2 864 aa19.58■□□□□ 0.72
SQSTM1-209ENST00000504627 CCL16O15467 120 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 CXCL8P10145 99 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 FSHRP23945 695 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 HOXA9P31269 272 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 ZNF131P52739 623 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 KYAT1Q16773 422 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 UVSSAQ2YD98 709 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 PRSS33Q8NF86 280 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 RSAD2Q8WXG1 361 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 KIF12Q96FN5 646 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 PLEKHA5Q9HAU0 1116 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 DUSP12Q9UNI6 340 aa19.57■□□□□ 0.72
SQSTM1-209ENST00000504627 H7C4K7 107 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 SYN3O14994 580 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 MEFVO15553 781 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 LAMP2P13473 410 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 ELF1P32519 619 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 ABCD1P33897 745 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 ARPP19P56211 112 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 PPP2R3AQ06190 1150 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 SPAG1Q07617 926 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 VARS2Q5ST30 1063 aaKnown RBP19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 RSPO2Q6UXX9 243 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 ALYREFQ86V81 257 aaKnown RBP19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 NXPE3Q969Y0 559 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 PAGE5Q96GU1 130 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 HAPLN2Q9GZV7 340 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 KBTBD4Q9NVX7 518 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 KIAA1468Q9P260 1216 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 VWA8A3KMH1 1905 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 CITO14578 2027 aa19.56■□□□□ 0.72
SQSTM1-209ENST00000504627 NMT1P30419 496 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-209ENST00000504627 TNFSF9P41273 254 aa19.55■□□□□ 0.72
SQSTM1-209ENST00000504627 NTHL1P78549 312 aa19.55■□□□□ 0.72
SQSTM1-209ENST00000504627 LRSAM1Q6UWE0 723 aa19.55■□□□□ 0.72
SQSTM1-209ENST00000504627 FLCNQ8NFG4 579 aa19.55■□□□□ 0.72
SQSTM1-209ENST00000504627 KCNN1Q92952 543 aa19.55■□□□□ 0.72
SQSTM1-209ENST00000504627 MSTO1Q9BUK6 570 aa19.55■□□□□ 0.72
SQSTM1-209ENST00000504627 RPF1Q9H9Y2 349 aaKnown RBP19.55■□□□□ 0.72
SQSTM1-209ENST00000504627 TUBGCP4Q9UGJ1 667 aa19.55■□□□□ 0.72
SQSTM1-209ENST00000504627 OGTO15294 1046 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 XPOTO43592 962 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 NARSO43776 548 aaKnown RBP19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 SMC2O95347 1197 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 PIGRP01833 764 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 CCDC192P0DO97 292 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 AMPD3Q01432 767 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 ROR1Q01973 937 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 PNOCQ13519 176 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 ASTLQ6HA08 431 aaPredicted RBP19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 SLC8B1Q6J4K2 584 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 RTL10Q7L3V2 364 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 DYMQ7RTS9 669 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 SLC44A3Q8N4M1 653 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 APPL2Q8NEU8 664 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 ZNF461Q8TAF7 563 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 FAM212AQ96EL1 285 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 SUSD3Q96L08 255 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 FUCA2Q9BTY2 467 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 LRRC27Q9C0I9 530 aa19.54■□□□□ 0.72
SQSTM1-209ENST00000504627 UBQLN1Q9UMX0 589 aaKnown RBP19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms