RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 SV2BQ7L1I2 683 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 LINC00528Q8N1L1 170 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 TMEM87AQ8NBN3 555 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 TMEM161BQ8NDZ6 487 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 ENGASEQ8NFI3 743 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 CCDC51Q96ER9 411 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 SPATA32Q96LK8 384 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 ADAM2Q99965 735 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 C7orf25Q9BPX7 421 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 LRRC27Q9C0I9 530 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 POLR3FQ9H1D9 316 aaPredicted RBP7.41□□□□□ -1.22
VPS52-219ENST00000493379 TNMDQ9H2S6 317 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 PTPRHQ9HD43 1115 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 PRMT7Q9NVM4 692 aaPredicted RBP7.41□□□□□ -1.22
VPS52-219ENST00000493379 TMEM161AQ9NX61 479 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 DACT1Q9NYF0 836 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 LARSQ9P2J5 1176 aaKnown RBP7.41□□□□□ -1.22
VPS52-219ENST00000493379 SEL1LQ9UBV2 794 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 POLIQ9UNA4 740 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 FAM50BQ9Y247 325 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 INSL6Q9Y581 213 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 PCDHGC5Q9Y5F6 944 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 LOC400499M0QZD8 3231 aa7.41□□□□□ -1.22
VPS52-219ENST00000493379 ZNF462Q96JM2 2506 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 PVALEFA0A1B0GWK0 134 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 ABLIM1O14639 778 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 CAPN5O15484 640 aaPredicted RBP7.4□□□□□ -1.22
VPS52-219ENST00000493379 MBTPS2O43462 519 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 TSPAN1O60635 241 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 PIGRP01833 764 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 LMNAP02545 664 aaKnown RBP7.4□□□□□ -1.22
VPS52-219ENST00000493379 MYL1P05976 194 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 STAG3L1P0CL83 205 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 ZSCAN20P17040 1043 aaPredicted RBP7.4□□□□□ -1.22
VPS52-219ENST00000493379 ATF7P17544 494 aaPredicted RBP7.4□□□□□ -1.22
VPS52-219ENST00000493379 ARF4P18085 180 aaPredicted RBP7.4□□□□□ -1.22
VPS52-219ENST00000493379 PROZP22891 400 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 MZF1P28698 734 aaPredicted RBP7.4□□□□□ -1.22
VPS52-219ENST00000493379 LTBRP36941 435 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 NCKAP1LP55160 1127 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 GTF2BQ00403 316 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 AMPD3Q01432 767 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 PLCB3Q01970 1234 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 NFX1Q12986 1120 aaKnown RBP7.4□□□□□ -1.22
VPS52-219ENST00000493379 FAM102BQ5T8I3 360 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 LRSAM1Q6UWE0 723 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 ZNF720Q7Z2F6 126 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 ECHDC2Q86YB7 292 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 CNNM3Q8NE01 707 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 TMEM174Q8WUU8 243 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 ALKBH8Q96BT7 664 aaKnown RBP7.4□□□□□ -1.22
VPS52-219ENST00000493379 CDK5RAP3Q96JB5 506 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 IFT74Q96LB3 600 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 NLRP4Q96MN2 994 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 PLIN2Q99541 437 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 POP1Q99575 1024 aaKnown RBP7.4□□□□□ -1.22
VPS52-219ENST00000493379 REEP2Q9BRK0 252 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 TRIM9Q9C026 710 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 OLFML3Q9NRN5 406 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 RNF19AQ9NV58 838 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 CLDND1Q9NY35 253 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 FAM13BQ9NYF5 915 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 KCNH3Q9ULD8 1083 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 STYXL1Q9Y6J8 313 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 ADGRA3Q8IWK6 1321 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 ZMYM2Q9UBW7 1377 aa7.4□□□□□ -1.22
VPS52-219ENST00000493379 ATG2AQ2TAZ0 1938 aa7.4□□□□□ -1.23
VPS52-219ENST00000493379 HECTD1Q9ULT8 2610 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 CNTNAP2Q9UHC6 1331 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 C5orf67F2Z3F1 127 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 H0YCG3 227 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 K7ERI5 159 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 POLR2DO15514 142 aaKnown RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 CSDE1O75534 798 aaKnown RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 PDGFAP04085 211 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 NCLP19338 710 aaKnown RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 CTSOP43234 321 aaPredicted RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 KCNJ6P48051 423 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 RAB27AP51159 221 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 POU5F1Q01860 360 aaKnown RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 SNW1Q13573 536 aaKnown RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 MAPK6Q16659 721 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 TCEAL5Q5H9L2 206 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 NT5DC1Q5TFE4 455 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 NOTUMQ6P988 496 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 ZPBP2Q6X784 338 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 CATSPER4Q7RTX7 472 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 GPBP1Q86WP2 473 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 TREML1Q86YW5 311 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 FMR1NBQ8N0W7 255 aaPredicted RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 SMG8Q8ND04 991 aaKnown RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 SPATA20Q8TB22 786 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 EDEM1Q92611 657 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 PABPC5Q96DU9 382 aaKnown RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 RIPOR3Q96MK2 946 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 CCDC43Q96MW1 224 aaKnown RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 TIGD1Q96MW7 591 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 CASD1Q96PB1 797 aa7.39□□□□□ -1.23
VPS52-219ENST00000493379 ACO2Q99798 780 aaKnown RBP7.39□□□□□ -1.23
VPS52-219ENST00000493379 PARVGQ9HBI0 331 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms