RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 PACSIN3Q9UKS6 424 aa3.87□□□□□ -1.79
DEPDC1-204ENST00000489862 A0A1W2PR48 441 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 NRP1O14786 923 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 KDM1AO60341 852 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 XPAP23025 273 aaPredicted RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 MANFP55145 182 aaKnown RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 PPARAQ07869 468 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 MRPL49Q13405 166 aaKnown RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 TRIM25Q14258 630 aaKnown RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 DDB1Q16531 1140 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 C1QTNF12Q5T7M4 302 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 NAIF1Q69YI7 327 aaPredicted RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 LMBR1LQ6UX01 489 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 FRMD7Q6ZUT3 714 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 COL23A1Q86Y22 540 aaPredicted RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 XYLT1Q86Y38 959 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 SMAP1Q8IYB5 467 aaPredicted RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 CMTR2Q8IYT2 770 aaKnown RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 C1orf162Q8NEQ5 155 aaPredicted RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 CPT1CQ8TCG5 803 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 MPP4Q96JB8 637 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 TAAR9Q96RI9 348 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 HERPUD2Q9BSE4 406 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 LSM14BQ9BX40 385 aaKnown RBP3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 ZNF69Q9UC07 566 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 PRSS50Q9UI38 385 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 GTF2A1LQ9UNN4 478 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 NUMBLQ9Y6R0 609 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 DGKBQ9Y6T7 804 aa3.86□□□□□ -1.79
DEPDC1-204ENST00000489862 K7ESF4 209 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 PTGS2P35354 604 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 GPR15P49685 360 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 DUSP2Q05923 314 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 LLGL1Q15334 1064 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 UBE3CQ15386 1083 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 DCAF17Q5H9S7 520 aaPredicted RBP3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 ARMC3Q5W041 872 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 ICE2Q659A1 982 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 CCDC62Q6P9F0 684 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 LDHAL6AQ6ZMR3 332 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 FAM83AQ86UY5 434 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 C11orf74Q86VG3 221 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 SLC41A1Q8IVJ1 513 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 TTC30BQ8N4P2 665 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 CLRN3Q8NCR9 226 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 WASF1Q92558 559 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 CRB3Q9BUF7 120 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 MLST8Q9BVC4 326 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 SELENOOQ9BVL4 669 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 APOL5Q9BWW9 433 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 KRTAP2-2Q9BYT5 123 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 ZNF768Q9H5H4 540 aaKnown RBP3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 CLIC5Q9NZA1 410 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 ANKRD6Q9Y2G4 727 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 PCDHGB6Q9Y5F9 930 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 CCDC88BA6NC98 1476 aa3.85□□□□□ -1.79
DEPDC1-204ENST00000489862 A6NCN8 305 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 F5H423 210 aaPredicted RBP3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 TPP1O14773 563 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 NRP2O60462 931 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 SCAF4O95104 1147 aaKnown RBP3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 SNUPNO95149 360 aaKnown RBP3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 LPLP06858 475 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 PHKG2P15735 406 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 RHCEP18577 417 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 GZMKP49863 264 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 NRG3P56975 720 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 RHDQ02161 417 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 PDCD1Q15116 288 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 CCDC178Q5BJE1 867 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 CT83Q5H943 113 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 PITRM1Q5JRX3 1037 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 IQSEC1Q6DN90 963 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 CCDC174Q6PII3 467 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 ABHD15Q6UXT9 468 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 RHOUQ7L0Q8 258 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 VRK3Q8IV63 474 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 OR52N2Q8NGI0 321 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 SLC35G2Q8TBE7 412 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 SMG7Q92540 1137 aaKnown RBP3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 SLC5A5Q92911 643 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 SKA1Q96BD8 255 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 ERP27Q96DN0 273 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 FAXDC2Q96IV6 333 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 SCLT1Q96NL6 688 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 SLC13A1Q9BZW2 595 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 NLRC4Q9NPP4 1024 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 MAN1C1Q9NR34 630 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 C14orf119Q9NWQ9 140 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 KCNG1Q9UIX4 513 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 HDAC9Q9UKV0 1011 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 PNMA8BQ9ULN7 279 aaPredicted RBP3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 EDARQ9UNE0 448 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 GPR52Q9Y2T5 361 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 SLC45A1Q9Y2W3 748 aa3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 NOC2LQ9Y3T9 749 aaKnown RBP3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 TOP2AP11388 1531 aaKnown RBP3.84□□□□□ -1.79
DEPDC1-204ENST00000489862 AP1G1O43747 822 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 ZEB2O60315 1214 aa3.84□□□□□ -1.8
DEPDC1-204ENST00000489862 SNX2O60749 519 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms