RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 FAM171A1Q5VUB5 890 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 DCLRE1AQ6PJP8 1040 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 SASS6Q6UVJ0 657 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 TAS1R1Q7RTX1 841 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 ADGRD2Q7Z7M1 963 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 NT5DC4Q86YG4 428 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 RNF168Q8IYW5 571 aaPredicted RBP11.94□□□□□ -0.5
UBE4B-210ENST00000488228 CSGALNACT2Q8N6G5 542 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 PARD3BQ8TEW8 1205 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 DDX27Q96GQ7 796 aaKnown RBP11.94□□□□□ -0.5
UBE4B-210ENST00000488228 ANKRD36BP1Q96IX9 119 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 LMAN2LQ9H0V9 348 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 MMRN2Q9H8L6 949 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 SIX4Q9UIU6 781 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 RWDD2AQ9UIY3 292 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 NUB1Q9Y5A7 615 aa11.94□□□□□ -0.5
UBE4B-210ENST00000488228 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.93□□□□□ -0.5
UBE4B-210ENST00000488228 ANO9A1A5B4 782 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 SYCE3A1L190 88 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 HIDE1A8MVS5 230 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 MAPK13O15264 365 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 SPTLC1O15269 473 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 TNNC2P02585 160 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 SOD2P04179 222 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 URODP06132 367 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 KRT13P13646 458 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 TKTP29401 623 aaKnown RBP11.93□□□□□ -0.5
UBE4B-210ENST00000488228 GLUD2P49448 558 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 FKBP3Q00688 224 aaKnown RBP11.93□□□□□ -0.5
UBE4B-210ENST00000488228 TYRO3Q06418 890 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 BFSP1Q12934 665 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 BIRC3Q13489 604 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 DCAF17Q5H9S7 520 aaPredicted RBP11.93□□□□□ -0.5
UBE4B-210ENST00000488228 INTS8Q75QN2 995 aaKnown RBP11.93□□□□□ -0.5
UBE4B-210ENST00000488228 TMC7Q7Z402 723 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 CXorf38Q8TB03 319 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 MICAL1Q8TDZ2 1067 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 ZNF516Q92618 1163 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 BORCS6Q96GS4 357 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 MKNK1Q9BUB5 465 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 DNAJC25Q9H1X3 360 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 PUF60Q9UHX1 559 aaKnown RBP11.93□□□□□ -0.5
UBE4B-210ENST00000488228 DACH1Q9UI36 760 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 ITGA11Q9UKX5 1188 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 AGAP1Q9UPQ3 857 aa11.93□□□□□ -0.5
UBE4B-210ENST00000488228 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.93□□□□□ -0.5
UBE4B-210ENST00000488228 C2orf16Q68DN1 1984 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 PTPRDP23468 1912 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 PIRO00625 290 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 CLSTN1O94985 981 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 CTSAP10619 480 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 VAMP7P51809 220 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 SMC1AQ14683 1233 aaKnown RBP11.92□□□□□ -0.5
UBE4B-210ENST00000488228 CCDC85BQ15834 202 aaPredicted RBP11.92□□□□□ -0.5
UBE4B-210ENST00000488228 DUOXA2Q1HG44 320 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 CCDC40Q4G0X9 1142 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 TCEAL5Q5H9L2 206 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 TDRD10Q5VZ19 366 aaKnown RBP11.92□□□□□ -0.5
UBE4B-210ENST00000488228 FOXR2Q6PJQ5 311 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 PRSS55Q6UWB4 352 aaPredicted RBP11.92□□□□□ -0.5
UBE4B-210ENST00000488228 TRAPPC11Q7Z392 1133 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 CEP57Q86XR8 500 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 TMC2Q8TDI7 906 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 CACTINQ8WUQ7 758 aaKnown RBP11.92□□□□□ -0.5
UBE4B-210ENST00000488228 PPM1EQ8WY54 764 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 RIN2Q8WYP3 895 aaPredicted RBP11.92□□□□□ -0.5
UBE4B-210ENST00000488228 ELMO3Q96BJ8 720 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 ZNF560Q96MR9 790 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 CEP63Q96MT8 703 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 SRRTQ9BXP5 876 aaKnown RBP11.92□□□□□ -0.5
UBE4B-210ENST00000488228 NSUN3Q9H649 340 aaKnown RBP11.92□□□□□ -0.5
UBE4B-210ENST00000488228 ANO10Q9NW15 660 aa11.92□□□□□ -0.5
UBE4B-210ENST00000488228 COL6A3P12111 3177 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 PRUNE2Q8WUY3 3088 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 C2orf71A6NGG8 1288 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 RPL17P18621 184 aaKnown RBP11.91□□□□□ -0.5
UBE4B-210ENST00000488228 POU3F3P20264 500 aaPredicted RBP11.91□□□□□ -0.5
UBE4B-210ENST00000488228 FGFR3P22607 806 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 GTF2F1P35269 517 aaKnown RBP eCLIP11.91□□□□□ -0.5
UBE4B-210ENST00000488228 GCLMP48507 274 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 AARSP49588 968 aaKnown RBP eCLIP11.91□□□□□ -0.5
UBE4B-210ENST00000488228 TAF6P49848 677 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 LILRA4P59901 499 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 CLDN10P78369 228 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 DSG1Q02413 1049 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 PPP3CAQ08209 521 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 ELAVL2Q12926 359 aaKnown RBP11.91□□□□□ -0.5
UBE4B-210ENST00000488228 USP41Q3LFD5 358 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 SV2CQ496J9 727 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 HSP90AA4PQ58FG1 418 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 TCERG1LQ5VWI1 586 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 KIAA1841Q6NSI8 718 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.91□□□□□ -0.5
UBE4B-210ENST00000488228 RBM23Q86U06 439 aaKnown RBP11.91□□□□□ -0.5
UBE4B-210ENST00000488228 GLYCTKQ8IVS8 523 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 SUSD3Q96L08 255 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 CNOT6LQ96LI5 555 aaKnown RBP11.91□□□□□ -0.5
UBE4B-210ENST00000488228 TTPALQ9BTX7 342 aa11.91□□□□□ -0.5
UBE4B-210ENST00000488228 ARMCX3Q9UH62 379 aaPredicted RBP11.91□□□□□ -0.5
UBE4B-210ENST00000488228 TIMM13Q9Y5L4 95 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms