RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	SYNPO2L	Q9H987	977 aa		5.24	□□□□□ -1.57
SNRNP40-205	ENST00000486941	SORCS3	Q9UPU3	1222 aa		5.24	□□□□□ -1.57
SNRNP40-205	ENST00000486941	SLX4	Q8IY92	1834 aa		5.24	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CARMIL3	Q8ND23	1372 aa		5.24	□□□□□ -1.57
SNRNP40-205	ENST00000486941	HEG1	Q9ULI3	1381 aa		5.24	□□□□□ -1.57
SNRNP40-205	ENST00000486941	DAPK3	O43293	454 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	MFAP3L	O75121	409 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	A1BG	P04217	495 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	ITGB1	P05556	798 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	PTGS2	P35354	604 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CASR	P41180	1078 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	IL12RB1	P42701	662 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	NPEPPS	P55786	919 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	ZNF174	Q15697	407 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	ZBTB41	Q5SVQ8	909 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CC2D1B	Q5T0F9	858 aa	Known RBP	5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	SOGA3	Q5TF21	947 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	MFSD5	Q6N075	450 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	DPY19L2P1	Q6NXN4	242 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CLEC4G	Q6UXB4	293 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	NXPE1	Q8N323	547 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	MSL3	Q8N5Y2	521 aa	Known RBP	5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CPT1C	Q8TCG5	803 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	PROKR1	Q8TCW9	393 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	RPGR	Q92834	1020 aa	Known RBP	5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	ARL8A	Q96BM9	186 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	DNAJC2	Q99543	621 aa	Known RBP	5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	NOL10	Q9BSC4	688 aa	Known RBP	5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	PRDM13	Q9H4Q3	707 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CABP5	Q9NP86	173 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CEMIP	Q8WUJ3	1361 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	COL3A1	P02461	1466 aa	Predicted RBP	5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	SCN7A	Q01118	1682 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	ARFGEF2	Q9Y6D5	1785 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CACNA1S	Q13698	1873 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	SCN4A	P35499	1836 aa		5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	COL11A2	P13942	1736 aa	Predicted RBP	5.23	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CENPVL1	A0A0U1RR11	272 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	ZNF891	A8MT65	544 aa	Predicted RBP	5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CAMTA2	O94983	1202 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	PCDH8	O95206	1070 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	LY86	O95711	162 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	LMNA	P02545	664 aa	Known RBP	5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	SRGN	P10124	158 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	DCAF17	Q5H9S7	520 aa	Predicted RBP	5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	PHYKPL	Q8IUZ5	450 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	LYSMD2	Q8IV50	215 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	LILRA3	Q8N6C8	439 aa	Predicted RBP	5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	CNBD1	Q8NA66	436 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	OR52N2	Q8NGI0	321 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	VOPP1	Q96AW1	172 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	MASTL	Q96GX5	879 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	PHACTR3	Q96KR7	559 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	ORAI3	Q9BRQ5	295 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	TEX101	Q9BY14	249 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	OSBPL2	Q9H1P3	480 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	TAOK3	Q9H2K8	898 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	PRDM12	Q9H4Q4	367 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	TOMM22	Q9NS69	142 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	DKK2	Q9UBU2	259 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	USP16	Q9Y5T5	823 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	PCNT	O95613	3336 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	MYPN	Q86TC9	1320 aa		5.22	□□□□□ -1.57
SNRNP40-205	ENST00000486941	BCOR	Q6W2J9	1755 aa		5.21	□□□□□ -1.57
SNRNP40-205	ENST00000486941	LEFTY2	O00292	366 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	NPHP1	O15259	732 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	KCNQ3	O43525	872 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ALDH1A2	O94788	518 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	IPO13	O94829	963 aa	Known RBP	5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	DDN	O94850	711 aa	Predicted RBP	5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	APP	P05067	770 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SNRPA1	P09661	255 aa	Known RBP	5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	HSPA1A	P0DMV8	641 aa	Known RBP	5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	HSPA1B	P0DMV9	641 aa	Known RBP	5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	CLK3	P49761	638 aa	Known RBP	5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	DSG1	Q02413	1049 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	ADCY1	Q08828	1119 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PABPC4	Q13310	644 aa	Known RBP eCLIP	5.21	□□□□□ -1.58	2e-12	■■■■□ 21.4
SNRNP40-205	ENST00000486941	CFAP100	Q494V2	611 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	BTNL9	Q6UXG8	535 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	LRRC55	Q6ZSA7	311 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SYT12	Q8IV01	421 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	C7orf31	Q8N865	590 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	BEND2	Q8NDZ0	799 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SH3TC2	Q8TF17	1288 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	CHTF18	Q8WVB6	975 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	CFAP53	Q96M91	514 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	KCNH6	Q9H252	994 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PODXL2	Q9NZ53	605 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PACSIN3	Q9UKS6	424 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	TMPRSS11E	Q9UL52	423 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	NUDC	Q9Y266	331 aa		5.21	□□□□□ -1.58
SNRNP40-205	ENST00000486941	HTATSF1	O43719	755 aa	Known RBP	5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	RFPL3	O75679	317 aa		5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SEC24D	O94855	1032 aa	Predicted RBP	5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	SCAF4	O95104	1147 aa	Known RBP	5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PFKM	P08237	780 aa		5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	NPR1	P16066	1061 aa		5.2	□□□□□ -1.58
SNRNP40-205	ENST00000486941	PRKAR2B	P31323	418 aa		5.2	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms