RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 HEATR3Q7Z4Q2 680 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 MAPKAPK5Q8IW41 473 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 GRAMD1CQ8IYS0 662 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 SLC35G2Q8TBE7 412 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 TBC1D15Q8TC07 691 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 DIS3LQ8TF46 1054 aaKnown RBP7.66□□□□□ -1.18
USP40-213ENST00000483216 PUS7Q96PZ0 661 aaKnown RBP7.66□□□□□ -1.18
USP40-213ENST00000483216 HS3ST4Q9Y661 456 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 ANXA1P04083 346 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 PRDX5P30044 214 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 ACVRL1P37023 503 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 IL12RB1P42701 662 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 OCA2Q04671 838 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 SLFN5Q08AF3 891 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 ABHD18Q0P651 414 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 TIGD2Q4W5G0 525 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 USP51Q70EK9 711 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 FAM90A1Q86YD7 464 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 TCEAL8Q8IYN2 117 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 AOPEPQ8N6M6 819 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 CLIP3Q96DZ5 547 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 PNKPQ96T60 521 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 LMBRD1Q9NUN5 540 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 HS3ST3A1Q9Y663 406 aa7.65□□□□□ -1.18
USP40-213ENST00000483216 AGFG2O95081 481 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 NDUFA10O95299 355 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 ALDH2P05091 517 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 ELANEP08246 267 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 TYRP14679 529 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 FGFR4P22455 802 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 CCDC93Q567U6 631 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 PDSS2Q86YH6 399 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 TMEM132CQ8N3T6 1108 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 CPEB3Q8NE35 698 aaKnown RBP7.64□□□□□ -1.19
USP40-213ENST00000483216 MARS2Q96GW9 593 aaKnown RBP7.64□□□□□ -1.19
USP40-213ENST00000483216 CDK5RAP3Q96JB5 506 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 TAAR9Q96RI9 348 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 ZSWIM1Q9BR11 485 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 ANLNQ9NQW6 1124 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 RLIMQ9NVW2 624 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 ABCF2Q9UG63 623 aa7.64□□□□□ -1.19
USP40-213ENST00000483216 FEZ2Q9UHY8 353 aaPredicted RBP7.64□□□□□ -1.19
USP40-213ENST00000483216 H3BML4 177 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 TSPAN6O43657 245 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 NKX6-1P78426 367 aaPredicted RBP7.63□□□□□ -1.19
USP40-213ENST00000483216 MXRA7P84157 204 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 LY6G5CQ5SRR4 150 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 B3GNTL1Q67FW5 361 aaPredicted RBP7.63□□□□□ -1.19
USP40-213ENST00000483216 ARHGEF19Q8IW93 802 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 FAM43AQ8N2R8 423 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 MAGEB6Q8N7X4 407 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 LRGUKQ96M69 825 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 MED15Q96RN5 788 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 PNPOQ9NVS9 261 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 KLHL42Q9P2K6 505 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 KCNE5Q9UJ90 142 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 NOB1Q9ULX3 412 aaKnown RBP7.63□□□□□ -1.19
USP40-213ENST00000483216 STXBP5LQ9Y2K9 1186 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 NR2E3Q9Y5X4 410 aa7.63□□□□□ -1.19
USP40-213ENST00000483216 CENPVL1A0A0U1RR11 272 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 CCDC78A2IDD5 438 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 PRPF3O43395 683 aaKnown RBP7.62□□□□□ -1.19
USP40-213ENST00000483216 ABHD16AO95870 558 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 GPANK1O95872 356 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 ADH4P08319 380 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 GNAI3P08754 354 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 FCER1AP12319 257 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 DDX6P26196 483 aaKnown RBP eCLIP7.62□□□□□ -1.19
USP40-213ENST00000483216 GDF5P43026 501 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 GNAI1P63096 354 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 HSD11B2P80365 405 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 RESTQ13127 1097 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 SPDYE7PQ495Y7 208 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 MINDY4Q4G0A6 757 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 CCDC157Q569K6 752 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 KCNV1Q6PIU1 500 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 FOXR2Q6PJQ5 311 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 DENND1CQ8IV53 801 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 PROKR1Q8TCW9 393 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 BOD1Q96IK1 185 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 CGRRF1Q99675 332 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 ADAM2Q99965 735 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 MRPL46Q9H2W6 279 aaKnown RBP7.62□□□□□ -1.19
USP40-213ENST00000483216 BRD9Q9H8M2 597 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 TMEM74BQ9NUR3 256 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 RNF181Q9P0P0 153 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 USP25Q9UHP3 1055 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 ZDHHC8Q9ULC8 765 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 SLC45A2Q9UMX9 530 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 MAP3K2Q9Y2U5 619 aa7.62□□□□□ -1.19
USP40-213ENST00000483216 AATKQ6ZMQ8 1374 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 CYR61O00622 381 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 PIK3CGP48736 1102 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 CAMKK1Q8N5S9 505 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 KLHDC4Q8TBB5 520 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 KLHL32Q96NJ5 620 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 ACO2Q99798 780 aaKnown RBP7.61□□□□□ -1.19
USP40-213ENST00000483216 MLST8Q9BVC4 326 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 C1orf43Q9BWL3 253 aa7.61□□□□□ -1.19
USP40-213ENST00000483216 CFAP97Q9P2B7 532 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms