RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 KNOP1Q1ED39 458 aaKnown RBP13.26□□□□□ -0.29
PTPRF-213ENST00000481019 C9orf57Q5W0N0 161 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 PTCRAQ6ISU1 281 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-213ENST00000481019 STXBP4Q6ZWJ1 553 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 PALB2Q86YC2 1186 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 SMYD4Q8IYR2 804 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-213ENST00000481019 GPD1LQ8N335 351 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 PLEKHO2Q8TD55 490 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 ADAMTS19Q8TE59 1207 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 PIK3R5Q8WYR1 880 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 DDX27Q96GQ7 796 aaKnown RBP13.26□□□□□ -0.29
PTPRF-213ENST00000481019 TTPALQ9BTX7 342 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 CLSTN2Q9H4D0 955 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 CD320Q9NPF0 282 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 RBAKQ9NYW8 714 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-213ENST00000481019 CD207Q9UJ71 328 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 UBQLN1Q9UMX0 589 aaKnown RBP13.26□□□□□ -0.29
PTPRF-213ENST00000481019 MAPK8IP1Q9UQF2 711 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 ANO9A1A5B4 782 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 TULP1O00294 542 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-213ENST00000481019 CAVIN2O95810 425 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 CYP3A5P20815 502 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 KLRC2P26717 231 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 ZNF445P59923 1031 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 PSMD2Q13200 908 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 ZSCAN23Q3MJ62 389 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 KIAA1841Q6NSI8 718 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-213ENST00000481019 CD302Q8IX05 232 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 RDH13Q8NBN7 331 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 SMRP1Q8NCR6 262 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 OR5B17Q8NGF7 314 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 CXorf38Q8TB03 319 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 FBXL18Q96ME1 805 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 ASB7Q9H672 318 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 STK39Q9UEW8 545 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 DERAQ9Y315 318 aa13.25□□□□□ -0.29
PTPRF-213ENST00000481019 USP15Q9Y4E8 981 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-213ENST00000481019 TIMM13Q9Y5L4 95 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-213ENST00000481019 PIRO00625 290 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 TGM5O43548 720 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 TBC1D4O60343 1298 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 AARSP49588 968 aaKnown RBP eCLIP13.24□□□□□ -0.29
PTPRF-213ENST00000481019 SMAD4Q13485 552 aaKnown RBP13.24□□□□□ -0.29
PTPRF-213ENST00000481019 KCNB1Q14721 858 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 PSMD5Q16401 504 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 VARS2Q5ST30 1063 aaKnown RBP13.24□□□□□ -0.29
PTPRF-213ENST00000481019 RARS2Q5T160 578 aaKnown RBP13.24□□□□□ -0.29
PTPRF-213ENST00000481019 LILRA6Q6PI73 481 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 SASS6Q6UVJ0 657 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 C1orf127Q8N9H9 656 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 BEST2Q8NFU1 509 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 SPATA20Q8TB22 786 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 SUSD3Q96L08 255 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 POP1Q99575 1024 aaKnown RBP13.24□□□□□ -0.29
PTPRF-213ENST00000481019 EMILIN2Q9BXX0 1053 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 GTPBP4Q9BZE4 634 aaKnown RBP13.24□□□□□ -0.29
PTPRF-213ENST00000481019 DMAC2Q9NW81 257 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 DPP3Q9NY33 737 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 TMEM63CQ9P1W3 806 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 FNIP2Q9P278 1114 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 C2CD2Q9Y426 696 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 PCDHA5Q9Y5H7 936 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 TSC2P49815 1807 aa13.24□□□□□ -0.29
PTPRF-213ENST00000481019 M0QZQ0 153 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 IL18RAPO95256 599 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 SMC2O95347 1197 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 LDHAP00338 332 aaKnown RBP13.23□□□□□ -0.29
PTPRF-213ENST00000481019 CCDC192P0DO97 292 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 CASP4P49662 377 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 LILRA4P59901 499 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 TFAMQ00059 246 aaKnown RBP13.23□□□□□ -0.29
PTPRF-213ENST00000481019 POU5F1Q01860 360 aaKnown RBP13.23□□□□□ -0.29
PTPRF-213ENST00000481019 CYP24A1Q07973 514 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 ELAVL2Q12926 359 aaKnown RBP13.23□□□□□ -0.29
PTPRF-213ENST00000481019 MRPL58Q14197 206 aaKnown RBP13.23□□□□□ -0.29
PTPRF-213ENST00000481019 BMS1Q14692 1282 aaKnown RBP13.23□□□□□ -0.29
PTPRF-213ENST00000481019 SNRNP35Q16560 246 aaKnown RBP13.23□□□□□ -0.29
PTPRF-213ENST00000481019 AAK1Q2M2I8 961 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 ISM2Q6H9L7 571 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 C12orf56Q8IXR9 622 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 XXYLT1Q8NBI6 393 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 SUSD6Q92537 303 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 CASP10Q92851 521 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 BORCS6Q96GS4 357 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 MTMR12Q9C0I1 747 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 MAN1C1Q9NR34 630 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 MTRRQ9UBK8 725 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 SIX4Q9UIU6 781 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 PCDHB8Q9UN66 801 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 NUB1Q9Y5A7 615 aa13.23□□□□□ -0.29
PTPRF-213ENST00000481019 NCOR1O75376 2440 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 TRIOO75962 3097 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 ZNF233A6NK53 670 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 RFPL2O75678 378 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 ADH1AP07327 375 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 BMP6P22004 513 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 POLR2BP30876 1174 aaKnown RBP13.22□□□□□ -0.29
PTPRF-213ENST00000481019 OR1D2P34982 312 aa13.22□□□□□ -0.29
PTPRF-213ENST00000481019 GSE1Q14687 1217 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms