RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, human

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIME1-205	ENST00000480139	BORCS6	Q96GS4	357 aa		21.33	■■□□□ 1.01
LIME1-205	ENST00000480139	GPR62	Q9BZJ7	368 aa		21.33	■■□□□ 1.01
LIME1-205	ENST00000480139	ENTPD7	Q9NQZ7	604 aa		21.33	■■□□□ 1.01
LIME1-205	ENST00000480139	VWA8	A3KMH1	1905 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	LRRIQ3	A6PVS8	624 aa	Predicted RBP	21.32	■■□□□ 1
LIME1-205	ENST00000480139	IKBKB	O14920	756 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	EPB41	P11171	864 aa	Known RBP	21.32	■■□□□ 1
LIME1-205	ENST00000480139	KRT13	P13646	458 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	TNNI1	P19237	187 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	IRS1	P35568	1242 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	USP41	Q3LFD5	358 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	21.32	■■□□□ 1
LIME1-205	ENST00000480139	TMC7	Q7Z402	723 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	FILIP1	Q7Z7B0	1213 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	CSGALNACT2	Q8N6G5	542 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	OR5B17	Q8NGF7	314 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	HASPIN	Q8TF76	798 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	NSUN3	Q9H649	340 aa	Known RBP	21.32	■■□□□ 1
LIME1-205	ENST00000480139	SSX2IP	Q9Y2D8	614 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	STXBP5L	Q9Y2K9	1186 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	NUB1	Q9Y5A7	615 aa		21.32	■■□□□ 1
LIME1-205	ENST00000480139	PRRC2B	Q5JSZ5	2229 aa	Known RBP	21.32	■■□□□ 1
LIME1-205	ENST00000480139	LETM1	O95202	739 aa	Predicted RBP	21.31	■■□□□ 1
LIME1-205	ENST00000480139	ITGB3	P05106	788 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	IGFBP6	P24592	240 aa	Predicted RBP	21.31	■■□□□ 1
LIME1-205	ENST00000480139	PNPLA4	P41247	253 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	GLUD2	P49448	558 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	VAMP7	P51809	220 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	DSG1	Q02413	1049 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	LMBRD2	Q68DH5	695 aa	Predicted RBP	21.31	■■□□□ 1
LIME1-205	ENST00000480139	TMEM130	Q8N3G9	435 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	LRRC52	Q8N7C0	313 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	PPP2R3C	Q969Q6	453 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	EEF2KMT	Q96G04	330 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	SUSD3	Q96L08	255 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	ZNF560	Q96MR9	790 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	POP1	Q99575	1024 aa	Known RBP	21.31	■■□□□ 1
LIME1-205	ENST00000480139	SCN1A	P35498	2009 aa		21.31	■■□□□ 1
LIME1-205	ENST00000480139	PPEF2	O14830	753 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	SYN3	O14994	580 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	LILRB3	O75022	631 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	FGFR1OP	O95684	399 aa	Known RBP	21.3	■■□□□ 1
LIME1-205	ENST00000480139	UROD	P06132	367 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	FGFR3	P22607	806 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	POLR2B	P30876	1174 aa	Known RBP	21.3	■■□□□ 1
LIME1-205	ENST00000480139	TAF6	P49848	677 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	STX17	P56962	302 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	LILRA4	P59901	499 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	RBP5	P82980	135 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	PTPN14	Q15678	1187 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	STX1A	Q16623	288 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	FAM171A1	Q5VUB5	890 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	KIAA0319	Q5VV43	1072 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	TAS1R1	Q7RTX1	841 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	TRAPPC11	Q7Z392	1133 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	MRPL43	Q8N983	215 aa	Known RBP	21.3	■■□□□ 1
LIME1-205	ENST00000480139	MICAL1	Q8TDZ2	1067 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	ZNF516	Q92618	1163 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	MED15	Q96RN5	788 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	TTPAL	Q9BTX7	342 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	METTL14	Q9HCE5	456 aa	Known RBP	21.3	■■□□□ 1
LIME1-205	ENST00000480139	MRPL17	Q9NRX2	175 aa	Known RBP	21.3	■■□□□ 1
LIME1-205	ENST00000480139	ANO10	Q9NW15	660 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	SIX4	Q9UIU6	781 aa		21.3	■■□□□ 1
LIME1-205	ENST00000480139	FSD2	A1L4K1	749 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	C2orf71	A6NGG8	1288 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139		M0QZQ0	153 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	GNA14	O95837	355 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	BRCC3	P46736	316 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	DLG4	P78352	724 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	SV2C	Q496J9	727 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	C1orf220	Q5T0J3	134 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	PLPP4	Q5VZY2	271 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	PDXDC1	Q6P996	788 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	FRMD5	Q7Z6J6	570 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	PIK3R5	Q8WYR1	880 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	ARMCX3	Q9UH62	379 aa	Predicted RBP	21.29	■■□□□ 1
LIME1-205	ENST00000480139	AGAP1	Q9UPQ3	857 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	TSC2	P49815	1807 aa		21.29	■■□□□ 1
LIME1-205	ENST00000480139	ARHGEF37	A1IGU5	675 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	HIDE1	A8MVS5	230 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	TULP1	O00294	542 aa	Predicted RBP	21.28	■■□□□ 1
LIME1-205	ENST00000480139	CXCL14	O95715	111 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	GTF2H1	P32780	548 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	MARS	P56192	900 aa	Known RBP	21.28	■■□□□ 1
LIME1-205	ENST00000480139	CREM	Q03060	361 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	NFKBIB	Q15653	356 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	RTP2	Q5QGT7	225 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	KIAA1841	Q6NSI8	718 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	FAM84A	Q96KN4	292 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	CDCA3	Q99618	268 aa	Predicted RBP	21.28	■■□□□ 1
LIME1-205	ENST00000480139	RXFP1	Q9HBX9	757 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	21.28	■■□□□ 1
LIME1-205	ENST00000480139	PCDHB8	Q9UN66	801 aa		21.28	■■□□□ 1
LIME1-205	ENST00000480139	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	21.27	■■□□□ 1
LIME1-205	ENST00000480139	SPTLC1	O15269	473 aa		21.27	■■□□□ 1
LIME1-205	ENST00000480139	STX10	O60499	249 aa		21.27	■■□□□ 1
LIME1-205	ENST00000480139	STAU1	O95793	577 aa	Known RBP	21.27	■■□□□ 1
LIME1-205	ENST00000480139	C4BPA	P04003	597 aa	Known RBP	21.27	■■□□□ 1
LIME1-205	ENST00000480139	KRT19	P08727	400 aa		21.27	■■□□□ 1

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms