RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 PCDHA7Q9UN72 937 aa6.83□□□□□ -1.32
SF3B1-209ENST00000479532 TELO2Q9Y4R8 837 aa6.83□□□□□ -1.32
SF3B1-209ENST00000479532 HTTP42858 3142 aa6.83□□□□□ -1.32
SF3B1-209ENST00000479532 KIAA0100Q14667 2235 aaKnown RBP6.82□□□□□ -1.32
SF3B1-209ENST00000479532 UQCRHLA0A096LP55 91 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 A0A1W2PQ27 194 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 A0A1W2PQ64 194 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 A0A1W2PQD8 194 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 PP2D1A8MPX8 630 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 H3BRJ5 948 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 ZNF862O60290 1169 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CAND2O75155 1236 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 EYA4O95677 639 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 SSBP05455 408 aaKnown RBP eCLIP6.82□□□□□ -1.32
SF3B1-209ENST00000479532 KRT18P05783 430 aaKnown RBP6.82□□□□□ -1.32
SF3B1-209ENST00000479532 UQCRHP07919 91 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CLTBP09497 229 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CYP2C9P11712 490 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 ATF4P18848 351 aaPredicted RBP6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CMA1P23946 247 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CDC25AP30304 524 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CDK7P50613 346 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CDC42EP1Q00587 391 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 AMPD3Q01432 767 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 GRIN1Q05586 938 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 KARSQ15046 597 aaKnown RBP6.82□□□□□ -1.32
SF3B1-209ENST00000479532 LRRC26Q2I0M4 334 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 SPECC1Q5M775 1068 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 RASIP1Q5U651 963 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 PLA2G4FQ68DD2 849 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 MTHFD1LQ6UB35 978 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 UBE2Q1Q7Z7E8 422 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 FAM126BQ8IXS8 530 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CEP57L1Q8IYX8 460 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CACTIN-AS1Q8N1I8 211 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 NME8Q8N427 588 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 IL22RA1Q8N6P7 574 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 METTL13Q8N6R0 699 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 IQUBQ8NA54 791 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 GOLM1Q8NBJ4 401 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 MCPH1Q8NEM0 835 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 MYRIPQ8NFW9 859 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CAGE1Q8TC20 777 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 STK35Q8TDR2 534 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 PIGOQ8TEQ8 1089 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 LMBR1Q8WVP7 490 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 MRPS27Q92552 414 aaKnown RBP6.82□□□□□ -1.32
SF3B1-209ENST00000479532 DHX38Q92620 1227 aaKnown RBP6.82□□□□□ -1.32
SF3B1-209ENST00000479532 TIPINQ9BVW5 301 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 CUEDC2Q9H467 287 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 MAGEF1Q9HAY2 307 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 ATP6V0A4Q9HBG4 840 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 PRDM5Q9NQX1 630 aaPredicted RBP6.82□□□□□ -1.32
SF3B1-209ENST00000479532 SETD4Q9NVD3 440 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 KCND2Q9NZV8 630 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 USP25Q9UHP3 1055 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 HOOK1Q9UJC3 728 aaKnown RBP6.82□□□□□ -1.32
SF3B1-209ENST00000479532 PCDHA2Q9Y5H9 948 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 NR2E3Q9Y5X4 410 aa6.82□□□□□ -1.32
SF3B1-209ENST00000479532 GRIN2DO15399 1336 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 TRIP12Q14669 1992 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-209ENST00000479532 SMIM35A0A1B0GVV1 85 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 SOX1O00570 391 aaPredicted RBP6.81□□□□□ -1.32
SF3B1-209ENST00000479532 B4GALT4O60513 344 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 USO1O60763 962 aaKnown RBP6.81□□□□□ -1.32
SF3B1-209ENST00000479532 PARNO95453 639 aaKnown RBP6.81□□□□□ -1.32
SF3B1-209ENST00000479532 RAG1P15918 1043 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 PLCG1P19174 1290 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 BMP6P22004 513 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 KLRC1P26715 233 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 HOXC8P31273 242 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 SYKP43405 635 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 RARRES1P49788 294 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 TLE2Q04725 743 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 EMC2Q15006 297 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 TMEM119Q4V9L6 283 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 DNTTIP2Q5QJE6 756 aaKnown RBP6.81□□□□□ -1.32
SF3B1-209ENST00000479532 ODR4Q5SWX8 454 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 RESP18Q5W5W9 173 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 HGSNATQ68CP4 663 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 EFCAB12Q6NXP0 572 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 TXNDC11Q6PKC3 985 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 SHC4Q6S5L8 630 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 ANO5Q75V66 913 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 C7orf61Q8IZ16 206 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 FSIP1Q8NA03 581 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 PSPC1Q8WXF1 523 aaKnown RBP6.81□□□□□ -1.32
SF3B1-209ENST00000479532 LARP4BQ92615 738 aaKnown RBP6.81□□□□□ -1.32
SF3B1-209ENST00000479532 RAD54LQ92698 747 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 EPSTI1Q96J88 318 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 SCLT1Q96NL6 688 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 PLIN2Q99541 437 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.81□□□□□ -1.32
SF3B1-209ENST00000479532 MMTAG2Q9BU76 263 aaKnown RBP6.81□□□□□ -1.32
SF3B1-209ENST00000479532 NT5C1AQ9BXI3 368 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 PANK2Q9BZ23 570 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 BHMT2Q9H2M3 363 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 HIPK3Q9H422 1215 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 SUGCTQ9HAC7 445 aa6.81□□□□□ -1.32
SF3B1-209ENST00000479532 CBX8Q9HC52 389 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms