RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 CEP85LQ5SZL2 805 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 LIN9Q5TKA1 542 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 PLEKHA7Q6IQ23 1121 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 CCDC137Q6PK04 289 aaKnown RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 ANKRD13AQ8IZ07 590 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 MAGOHBQ96A72 148 aaKnown RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 TMEM109Q9BVC6 243 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 NFKBIZQ9BYH8 718 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 ASCC2Q9H1I8 757 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 PLEKHA4Q9H4M7 779 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 AZI2Q9H6S1 392 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 TMEM110-MUSTN1A8MSY1 372 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 PROSCO94903 275 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 LSM8O95777 96 aaKnown RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 FLT3P36888 993 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 MOGSQ13724 837 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 TTC27Q6P3X3 843 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 NCAPG2Q86XI2 1143 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 SHCBP1Q8NEM2 672 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 C18orf8Q96DM3 657 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 ACO2Q99798 780 aaKnown RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 PAGR1Q9BTK6 254 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 HOMER3Q9NSC5 361 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 WBP1LQ9NX94 342 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 ATXN2Q99700 1313 aaKnown RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 ZBTB42B2RXF5 422 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 ASS1P00966 412 aaKnown RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 NOP14P78316 857 aaKnown RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 POU5F1BQ06416 359 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 NAA35Q5VZE5 725 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 CYP4F22Q6NT55 531 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 GTF3C2Q8WUA4 911 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 ART4Q93070 314 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 ZBTB45Q96K62 511 aaPredicted RBP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 ANAPC7Q9UJX3 599 aa13.03□□□□□ -0.32
PTPRF-212ENST00000477970 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.03□□□□□ -0.32
PTPRF-212ENST00000477970 MYO1FO00160 1098 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 OGTO15294 1046 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 CLDN3O15551 220 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 GNGT1P63211 74 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 DHX9Q08211 1270 aaKnown RBP13.02□□□□□ -0.32
PTPRF-212ENST00000477970 GADL1Q6ZQY3 521 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 TSHZ1Q6ZSZ6 1077 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 ZBTB8OSQ8IWT0 167 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 C3orf20Q8ND61 904 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 PRPF31Q8WWY3 499 aaKnown RBP13.02□□□□□ -0.32
PTPRF-212ENST00000477970 DPH5Q9H2P9 285 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 PABPC3Q9H361 631 aaKnown RBP13.02□□□□□ -0.32
PTPRF-212ENST00000477970 MROH8Q9H579 483 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 SAGE1Q9NXZ1 904 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 CPSF3Q9UKF6 684 aaKnown RBP13.02□□□□□ -0.32
PTPRF-212ENST00000477970 UMODL1Q5DID0 1318 aa13.02□□□□□ -0.32
PTPRF-212ENST00000477970 CA12O43570 354 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 RARAP10276 462 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 GNA15P30679 374 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 NCOA4Q13772 614 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 AADACL2Q6P093 401 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 CCDC62Q6P9F0 684 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 RBBP8NLQ8NC74 664 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-212ENST00000477970 DDX27Q96GQ7 796 aaKnown RBP13.02□□□□□ -0.33
PTPRF-212ENST00000477970 ZNF518BQ9C0D4 1074 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 EPB41L4BQ9H329 900 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 PTPRHQ9HD43 1115 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 WHRNQ9P202 907 aa13.02□□□□□ -0.33
PTPRF-212ENST00000477970 RRM1P23921 792 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 CDH5P33151 784 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 MKRN4PQ13434 485 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 SLMAPQ14BN4 828 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 FASTKD5Q7L8L6 764 aaKnown RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 KATNAL2Q8IYT4 538 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 UBLCP1Q8WVY7 318 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 GLG1Q92896 1179 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 BTBD6Q96KE9 485 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 MTRF1LQ9UGC7 380 aaKnown RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 NUB1Q9Y5A7 615 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 PCDHB4Q9Y5E5 795 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 ASAP2O43150 1006 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 PAEPP09466 180 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 ZNF157P51786 506 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 LAMTOR4Q0VGL1 99 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 ZBTB41Q5SVQ8 909 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 SRLQ86TD4 932 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 HOOK3Q86VS8 718 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 TLCD1Q96CP7 247 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 CFHR5Q9BXR6 569 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 IMPG2Q9BZV3 1241 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 OSBPP22059 807 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 MDH1P40925 334 aaKnown RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 RPL21P46778 160 aaKnown RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 PMS2P54278 862 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 TFDP1Q14186 410 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 PLCB4Q15147 1175 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 ZNF568Q3ZCX4 644 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 SPATS2Q86XZ4 545 aaKnown RBP13.01□□□□□ -0.33
PTPRF-212ENST00000477970 OR5B17Q8NGF7 314 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 GRK7Q8WTQ7 553 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 CNKSR2Q8WXI2 1034 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 CYFIP2Q96F07 1278 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 FAM107BQ9H098 131 aa13.01□□□□□ -0.33
PTPRF-212ENST00000477970 FZD8Q9H461 694 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms