RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 SPO11Q9Y5K1 396 aa5.27□□□□□ -1.57
VPS13A-210ENST00000471439 TEP1Q99973 2627 aaKnown RBP5.26□□□□□ -1.57
VPS13A-210ENST00000471439 CYSRT1A8MQ03 144 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 ADM5C9JUS6 153 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 MUSKO15146 869 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 RAD17O75943 681 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 HSP90B1P14625 803 aaKnown RBP5.26□□□□□ -1.57
VPS13A-210ENST00000471439 CPEP16870 476 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 SMAD3P84022 425 aaKnown RBP5.26□□□□□ -1.57
VPS13A-210ENST00000471439 ROM1Q03395 351 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 TERF2Q15554 542 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 ZNF174Q15697 407 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 BROXQ5VW32 411 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 RNF219Q5W0B1 726 aaPredicted RBP5.26□□□□□ -1.57
VPS13A-210ENST00000471439 Q6ZSN1 163 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 Q8N1X5 172 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 CNTD1Q8N815 330 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 SLC5A5Q92911 643 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 MTMR8Q96EF0 704 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 TMEM176AQ96HP8 235 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 UIMC1Q96RL1 719 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 ADOQ96SZ5 270 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 KCNH6Q9H252 994 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 ACSS2Q9NR19 701 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 KLHL42Q9P2K6 505 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 PUF60Q9UHX1 559 aaKnown RBP5.26□□□□□ -1.57
VPS13A-210ENST00000471439 DNAI1Q9UI46 699 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 TCAF1Q9Y4C2 921 aa5.26□□□□□ -1.57
VPS13A-210ENST00000471439 ZNF831Q5JPB2 1677 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 BPTFQ12830 3046 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 APOL3O95236 402 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 COMTP21964 271 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 ATP2C1P98194 919 aaPredicted RBP5.25□□□□□ -1.57
VPS13A-210ENST00000471439 FOXL1Q12952 345 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 EPHA7Q15375 998 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 TTC38Q5R3I4 469 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 ZNF808Q8N4W9 903 aaPredicted RBP5.25□□□□□ -1.57
VPS13A-210ENST00000471439 TUBGCP5Q96RT8 1024 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 SMAD5Q99717 465 aaKnown RBP5.25□□□□□ -1.57
VPS13A-210ENST00000471439 MYL10Q9BUA6 226 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 ASPSCR1Q9BZE9 553 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 HECAQ9UBI9 543 aaPredicted RBP5.25□□□□□ -1.57
VPS13A-210ENST00000471439 CTDP1Q9Y5B0 961 aaPredicted RBP5.25□□□□□ -1.57
VPS13A-210ENST00000471439 SLC30A1Q9Y6M5 507 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 KDRP35968 1356 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 ASPMQ8IZT6 3477 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 SSC5DA1L4H1 1573 aa5.25□□□□□ -1.57
VPS13A-210ENST00000471439 C2orf78A6NCI8 922 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 MAFO75444 373 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-210ENST00000471439 GJB1P08034 283 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 HNRNPLP14866 589 aaKnown RBP eCLIP5.24□□□□□ -1.57
VPS13A-210ENST00000471439 ACO1P21399 889 aaKnown RBP5.24□□□□□ -1.57
VPS13A-210ENST00000471439 MSX2P35548 267 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-210ENST00000471439 ZXDAP98168 799 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 OCRLQ01968 901 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 SREBF2Q12772 1141 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 ZBTB41Q5SVQ8 909 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 IQSEC1Q6DN90 963 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 NECAB2Q7Z6G3 386 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 C11orf74Q86VG3 221 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 RAVER1Q8IY67 606 aaKnown RBP5.24□□□□□ -1.57
VPS13A-210ENST00000471439 NKD2Q969F2 451 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-210ENST00000471439 LTV1Q96GA3 475 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-210ENST00000471439 BRIP1Q9BX63 1249 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 TOPORSQ9NS56 1045 aaPredicted RBP5.24□□□□□ -1.57
VPS13A-210ENST00000471439 TRHDEQ9UKU6 1024 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 DENND2AQ9ULE3 1009 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 RBM8AQ9Y5S9 174 aaKnown RBP5.24□□□□□ -1.57
VPS13A-210ENST00000471439 ZSWIM8A7E2V4 1837 aa5.24□□□□□ -1.57
VPS13A-210ENST00000471439 ZNF462Q96JM2 2506 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 DMXL1Q9Y485 3027 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 SHTN1A0MZ66 631 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 ALG1L2C9J202 215 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 PI4K2BG5E9Z4 385 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 ELL2O00472 640 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-210ENST00000471439 GABRDO14764 452 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 CYP27B1O15528 508 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 SLC26A4O43511 780 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 CYP17A1P05093 508 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 GMPSP49915 693 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-210ENST00000471439 ERVK-21P61565 698 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 ADAM8P78325 824 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 PHC1P78364 1004 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 SP3Q02447 781 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 ITKQ08881 620 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 RIN1Q13671 783 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 PDCD1Q15116 288 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 ST3GAL2Q16842 350 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 ABCB5Q2M3G0 1257 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 MOB2Q70IA6 237 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 CBARPQ8N350 705 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-210ENST00000471439 C7orf31Q8N865 590 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 SHCBP1Q8NEM2 672 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 DYDC2Q96IM9 177 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 SCAND2PQ9GZW5 306 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-210ENST00000471439 TMPRSS5Q9H3S3 457 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 MTG2Q9H4K7 406 aa5.23□□□□□ -1.57
VPS13A-210ENST00000471439 TYW1Q9NV66 732 aaKnown RBP5.23□□□□□ -1.57
VPS13A-210ENST00000471439 SAE1Q9UBE0 346 aaPredicted RBP5.23□□□□□ -1.57
VPS13A-210ENST00000471439 COL15A1P39059 1388 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms