RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 TMC2Q8TDI7 906 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 RABGGTAQ92696 567 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 C18orf25Q96B23 403 aaPredicted RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 KIAA1586Q9HCI6 787 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 SIX2Q9NPC8 291 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 NLRC4Q9NPP4 1024 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 FAM105AQ9NUU6 356 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 MROH7Q68CQ1 1323 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 TTC26A0AVF1 554 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 MAPK13O15264 365 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 TLR3O15455 904 aaKnown RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 C4BPAP04003 597 aaKnown RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 CLTBP09497 229 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 ATF7P17544 494 aaPredicted RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 CDC25BP30305 580 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 GRM5P41594 1212 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 MXI1P50539 228 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 SMAD3P84022 425 aaKnown RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 TBX2Q13207 712 aaPredicted RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 SKIV2LQ15477 1246 aaKnown RBP11.12□□□□□ -0.63
USP39-210ENST00000459775 EXOC3L4Q17RC7 722 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 LMO3Q8TAP4 145 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 KAT5Q92993 513 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 TOX2Q96NM4 488 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 ERGIC2Q96RQ1 377 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 MIOSQ9NXC5 875 aa11.12□□□□□ -0.63
USP39-210ENST00000459775 FAM170AA1A519 330 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 KIAA0391O15091 583 aaKnown RBP11.11□□□□□ -0.63
USP39-210ENST00000459775 TIMM44O43615 452 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 AXLP30530 894 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 BIRC3Q13489 604 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 BIRC2Q13490 618 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 DCAF4L1Q3SXM0 396 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 RRAGAQ7L523 313 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 TMCO2Q7Z6W1 182 aaPredicted RBP11.11□□□□□ -0.63
USP39-210ENST00000459775 ARHGEF19Q8IW93 802 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 CACTINQ8WUQ7 758 aaKnown RBP11.11□□□□□ -0.63
USP39-210ENST00000459775 TATDN2Q93075 761 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 RPS6KC1Q96S38 1066 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 INTS2Q9H0H0 1204 aaKnown RBP11.11□□□□□ -0.63
USP39-210ENST00000459775 GOLGA2P5Q9HBQ8 144 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 PLSCR2Q9NRY7 297 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 PAXBP1Q9Y5B6 917 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 FHOD1Q9Y613 1164 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 PITPNM1O00562 1244 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 PPEF2O14830 753 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 ACRP10323 421 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 TRIM21P19474 475 aaKnown RBP11.11□□□□□ -0.63
USP39-210ENST00000459775 MLH1P40692 756 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 POLR2FP61218 127 aaKnown RBP11.11□□□□□ -0.63
USP39-210ENST00000459775 CLDN10P78369 228 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 EPC2Q52LR7 807 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 C1orf53Q5VUE5 145 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 E4F1Q66K89 784 aaPredicted RBP11.11□□□□□ -0.63
USP39-210ENST00000459775 PHLDB3Q6NSJ2 640 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 TRIM65Q6PJ69 517 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 GBP6Q6ZN66 633 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 AGMOQ6ZNB7 445 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 C15orf39Q6ZRI6 1047 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.11□□□□□ -0.63
USP39-210ENST00000459775 SPOCK2Q92563 424 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 KIF12Q96FN5 646 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 GAD1Q99259 594 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 CGRRF1Q99675 332 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 TUBGCP4Q9UGJ1 667 aa11.11□□□□□ -0.63
USP39-210ENST00000459775 LTBP2Q14767 1821 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 A0A1W2PQC6 194 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 CAND2O75155 1236 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 HLA-DRAP01903 254 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 CSF2RAP15509 400 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 GATMP50440 423 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 PPP2R3AQ06190 1150 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 SOX4Q06945 474 aaPredicted RBP11.1□□□□□ -0.63
USP39-210ENST00000459775 PCBP1Q15365 356 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP39-210ENST00000459775 ZACNQ401N2 412 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 PLEKHG4Q58EX7 1191 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 KLHDC7AQ5VTJ3 777 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 KRT39Q6A163 491 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 ALKAL1Q6UXT8 129 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 TRAPPC11Q7Z392 1133 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 ZNF710Q8N1W2 664 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 TC2NQ8N9U0 490 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 GSTCDQ8NEC7 633 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 SNX27Q96L92 541 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 CDX2Q99626 313 aaPredicted RBP11.1□□□□□ -0.63
USP39-210ENST00000459775 TTYH3Q9C0H2 523 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 KCNF1Q9H3M0 494 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 APOBEC3GQ9HC16 384 aaKnown RBP11.1□□□□□ -0.63
USP39-210ENST00000459775 TMEM8AQ9HCN3 771 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 MED4Q9NPJ6 270 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 KLF15Q9UIH9 416 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 SIX4Q9UIU6 781 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 TMA7Q9Y2S6 64 aaKnown RBP11.1□□□□□ -0.63
USP39-210ENST00000459775 SCN5AQ14524 2016 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 TET1Q8NFU7 2136 aa11.1□□□□□ -0.63
USP39-210ENST00000459775 RANBP2P49792 3224 aaKnown RBP11.09□□□□□ -0.63
USP39-210ENST00000459775 SMIM28A0A1B0GU29 152 aa11.09□□□□□ -0.63
USP39-210ENST00000459775 PTGESO14684 152 aa11.09□□□□□ -0.63
USP39-210ENST00000459775 CALCAP01258 141 aa11.09□□□□□ -0.63
USP39-210ENST00000459775 KRT19P08727 400 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms