RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 J3KRW8 73 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 GPR25O00155 361 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 NVLO15381 856 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 RNF113AO15541 343 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 RFPL1O75677 317 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 TOMM70O94826 608 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ASLP04424 464 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 MYBP10242 640 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 PRKAR1BP31321 381 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 EVI2BP34910 448 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 CHKAP35790 457 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 IGFALSP35858 605 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ADCYAP1R1P41586 468 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 HTR3AP46098 478 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 AMPHP49418 695 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 KPNA1P52294 538 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 BLVRAP53004 296 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ACY1Q03154 408 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 SCRN1Q12765 414 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 PRKG2Q13237 762 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 HLTFQ14527 1009 aaKnown RBP eCLIP5.17□□□□□ -1.583e-6■□□□□ 9.9
CCDC88A-209ENST00000456975 RCSD1Q6JBY9 416 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ELMSAN1Q6PJG2 1045 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 SLC30A9Q6PML9 568 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ANGPTL8Q6UXH0 198 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 CMIPQ8IY22 773 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 FAM26EQ8N5C1 309 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 TMEM57Q8N5G2 664 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 SPATA5Q8NB90 893 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 PJA1Q8NG27 643 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 OR6C4Q8NGE1 309 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 BAHD1Q8TBE0 780 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 PPP2R3CQ969Q6 453 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 GTPBP3Q969Y2 492 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 INTS12Q96CB8 462 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 WNK4Q96J92 1243 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ALS2CR12Q96Q35 445 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 TUBA1CQ9BQE3 449 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 JPH2Q9BR39 696 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ZPBPQ9BS86 351 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 EDEM3Q9BZQ6 932 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 NRSN2Q9GZP1 204 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 CRLF2Q9HC73 371 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 NLRC4Q9NPP4 1024 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 AAASQ9NRG9 546 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 AGTPBP1Q9UPW5 1226 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 HIF3AQ9Y2N7 669 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF451Q9Y4E5 1061 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 PCDHB2Q9Y5E7 798 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.17□□□□□ -1.582e-6■□□□□ 9.5
CCDC88A-209ENST00000456975 BZW2Q9Y6E2 419 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 KIAA1551Q9HCM1 1747 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 UBR3Q6ZT12 1888 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 KIF13BQ9NQT8 1826 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 CCDC169A6NNP5 214 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 AP3B1O00203 1094 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 CACNB4O00305 520 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 HDAC3O15379 428 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 YKT6O15498 198 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 MT-ND3P03897 115 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 IFIT1P09914 478 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 TRIM27P14373 513 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 ATP6V1B1P15313 513 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF3P17036 446 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 BPIP17213 487 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 HNRNPH1P31943 449 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 HADHAP40939 763 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SLC8A3P57103 927 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 GALEQ14376 348 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SAFBQ15424 915 aaKnown RBP eCLIP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SLC14A2Q15849 920 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 NKG7Q16617 165 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 TUBB8Q3ZCM7 444 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 THEMIS2Q5TEJ8 643 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 FAM47EQ6ZV65 393 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 B4GALNT4Q76KP1 1039 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 EPM2AIP1Q7L775 607 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 GALNT13Q8IUC8 556 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SYCP3Q8IZU3 236 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SPARTQ8N0X7 666 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SYT2Q8N9I0 419 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 BVESQ8NE79 360 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 IL17REQ8NFR9 667 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 FUBP3Q96I24 572 aaKnown RBP eCLIP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 OSBPL9Q96SU4 736 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 LPIN3Q9BQK8 851 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SARGQ9BW04 601 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 MMRN2Q9H8L6 949 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 XAB2Q9HCS7 855 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 ABCF3Q9NUQ8 709 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 PPP1R14DQ9NXH3 145 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 TOGARAM1Q9Y4F4 1720 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 GMEB1Q9Y692 573 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 MYPNQ86TC9 1320 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 IGSF1Q8N6C5 1336 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 ARFGEF1Q9Y6D6 1849 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 RGPD2P0DJD1 1756 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 ANO9A1A5B4 782 aa5.16□□□□□ -1.58
CCDC88A-209ENST00000456975 A8MVJ9 347 aa5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms