RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 TJAP1Q5JTD0 557 aa20.2■□□□□ 0.82
SHH-203ENST00000435425 LMBRD2Q68DH5 695 aaPredicted RBP20.2■□□□□ 0.82
SHH-203ENST00000435425 PTCRAQ6ISU1 281 aaPredicted RBP20.2■□□□□ 0.82
SHH-203ENST00000435425 DSTYKQ6XUX3 929 aa20.2■□□□□ 0.82
SHH-203ENST00000435425 PPFIBP1Q86W92 1011 aa20.2■□□□□ 0.82
SHH-203ENST00000435425 GOLGA5Q8TBA6 731 aa20.2■□□□□ 0.82
SHH-203ENST00000435425 LNX1Q8TBB1 728 aaPredicted RBP20.2■□□□□ 0.82
SHH-203ENST00000435425 SLC22A17Q8WUG5 538 aa20.2■□□□□ 0.82
SHH-203ENST00000435425 CASP10Q92851 521 aa20.2■□□□□ 0.82
SHH-203ENST00000435425 KCTD10Q9H3F6 313 aa20.2■□□□□ 0.82
SHH-203ENST00000435425 RXFP1Q9HBX9 757 aa20.2■□□□□ 0.82
SHH-203ENST00000435425 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.2■□□□□ 0.82
SHH-203ENST00000435425 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.2■□□□□ 0.82
SHH-203ENST00000435425 SPDYE4A6NLX3 237 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 SPATA31D3P0C874 917 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 CLCN4P51793 760 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 C9orf57Q5W0N0 161 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 ANKRD54Q6NXT1 300 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 SPATA31D4Q6ZUB0 917 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 CACTINQ8WUQ7 758 aaKnown RBP20.19■□□□□ 0.82
SHH-203ENST00000435425 PIK3R5Q8WYR1 880 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 MSLNLQ96KJ4 702 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 GSDMAQ96QA5 445 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 SCN1AP35498 2009 aa20.19■□□□□ 0.82
SHH-203ENST00000435425 PDXKO00764 312 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 CALUO43852 315 aaPredicted RBP20.18■□□□□ 0.82
SHH-203ENST00000435425 TMEM191BP0C7N4 346 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 BMP1P13497 986 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 CREMQ03060 361 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 SURF1Q15526 300 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 ZNF658Q5TYW1 1059 aaPredicted RBP20.18■□□□□ 0.82
SHH-203ENST00000435425 TMEM184AQ6ZMB5 413 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 NT5DC4Q86YG4 428 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 C12orf56Q8IXR9 622 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 GUF1Q8N442 669 aaKnown RBP20.18■□□□□ 0.82
SHH-203ENST00000435425 C12orf76Q8N812 135 aaPredicted RBP20.18■□□□□ 0.82
SHH-203ENST00000435425 CCDC127Q96BQ5 260 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 SUSD3Q96L08 255 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 FBXL18Q96ME1 805 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 FNIP2Q9P278 1114 aa20.18■□□□□ 0.82
SHH-203ENST00000435425 PIRO00625 290 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 NR3C1P04150 777 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 ITGB3P05106 788 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 KRT19P08727 400 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 DLATP10515 647 aaKnown RBP20.17■□□□□ 0.82
SHH-203ENST00000435425 IL9P15248 144 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 CAMK4Q16566 473 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 VARS2Q5ST30 1063 aaKnown RBP20.17■□□□□ 0.82
SHH-203ENST00000435425 CEP135Q66GS9 1140 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 PDXDC1Q6P996 788 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 ELOA2Q8IYF1 753 aaPredicted RBP20.17■□□□□ 0.82
SHH-203ENST00000435425 GPR65Q8IYL9 337 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 CSGALNACT2Q8N6G5 542 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 ANKRD36BP1Q96IX9 119 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 GBP4Q96PP9 640 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 FNBP1Q96RU3 617 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 POP1Q99575 1024 aaKnown RBP20.17■□□□□ 0.82
SHH-203ENST00000435425 CLSTN3Q9BQT9 956 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 MTMR12Q9C0I1 747 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 AGAP1Q9UPQ3 857 aa20.17■□□□□ 0.82
SHH-203ENST00000435425 TIMM13Q9Y5L4 95 aaPredicted RBP20.17■□□□□ 0.82
SHH-203ENST00000435425 MTCL1Q9Y4B5 1905 aaKnown RBP20.17■□□□□ 0.82
SHH-203ENST00000435425 ANO9A1A5B4 782 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 GRXCR2A6NFK2 248 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 SYN3O14994 580 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 SPTLC1O15269 473 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 ADAM12O43184 909 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 MBTPS2O43462 519 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 GLUD1P00367 558 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 TNNI1P19237 187 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 POLR2BP30876 1174 aaKnown RBP20.16■□□□□ 0.82
SHH-203ENST00000435425 OR1D2P34982 312 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 PRCPP42785 496 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 ARPP19P56211 112 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 LILRA4P59901 499 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 CYP24A1Q07973 514 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 RARS2Q5T160 578 aaKnown RBP20.16■□□□□ 0.82
SHH-203ENST00000435425 SCARA3Q6AZY7 606 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 SYCE2Q6PIF2 218 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 ANKS3Q6ZW76 656 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 OR5B17Q8NGF7 314 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 INTS13Q9NVM9 706 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 MAN1B1Q9UKM7 699 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 PCDHB8Q9UN66 801 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 PTPRJQ12913 1337 aa20.16■□□□□ 0.82
SHH-203ENST00000435425 BIN1O00499 593 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 TGM5O43548 720 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 TNNC2P02585 160 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 CASP4P49662 377 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 TAF6P49848 677 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 SMAD4Q13485 552 aaKnown RBP20.15■□□□□ 0.82
SHH-203ENST00000435425 PSMD6Q15008 389 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 PUS10Q3MIT2 529 aaKnown RBP20.15■□□□□ 0.82
SHH-203ENST00000435425 RSPO2Q6UXX9 243 aaPredicted RBP20.15■□□□□ 0.82
SHH-203ENST00000435425 CLEC17AQ6ZS10 378 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 C1orf127Q8N9H9 656 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 APPL2Q8NEU8 664 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 SPATA20Q8TB22 786 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 SENP8Q96LD8 212 aa20.15■□□□□ 0.82
SHH-203ENST00000435425 MAN1C1Q9NR34 630 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms