RNA–Protein interactions for RNA: ENST00000434601.7

LINC00539-203, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 960 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-203ENST00000434601 FBXL13Q8NEE6 735 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 LMO3Q8TAP4 145 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 TAS1R2Q8TE23 839 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 GDPD5Q8WTR4 605 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 FAM212AQ96EL1 285 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 SAMD11Q96NU1 681 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 CCDC94Q9BW85 323 aaPredicted RBP12.16□□□□□ -0.46
LINC00539-203ENST00000434601 NUCKS1Q9H1E3 243 aaKnown RBP12.16□□□□□ -0.46
LINC00539-203ENST00000434601 NLRC4Q9NPP4 1024 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 ZNHIT6Q9NWK9 470 aaKnown RBP12.16□□□□□ -0.46
LINC00539-203ENST00000434601 APEX2Q9UBZ4 518 aa12.16□□□□□ -0.46
LINC00539-203ENST00000434601 C4BPAP04003 597 aaKnown RBP12.15□□□□□ -0.46
LINC00539-203ENST00000434601 HNRNPH3P31942 346 aaKnown RBP12.15□□□□□ -0.46
LINC00539-203ENST00000434601 PIK3CAP42336 1068 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 BIRC3Q13489 604 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 MBTPS1Q14703 1052 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 PTPROQ16827 1216 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 PLEKHG4Q58EX7 1191 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 FBXO47Q5MNV8 452 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 TDRD10Q5VZ19 366 aaKnown RBP12.15□□□□□ -0.46
LINC00539-203ENST00000434601 CYP26C1Q6V0L0 522 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 TMCO2Q7Z6W1 182 aaPredicted RBP12.15□□□□□ -0.46
LINC00539-203ENST00000434601 TMTC1Q8IUR5 882 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 EFCAB13Q8IY85 973 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 TMEM192Q8IY95 271 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 FBXO22Q8NEZ5 403 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 DBF4BQ8NFT6 615 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 OR5B17Q8NGF7 314 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 SEPT8Q92599 483 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 ZNF516Q92618 1163 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 SEMA4DQ92854 862 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 FAM122AQ96E09 287 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 FAM84AQ96KN4 292 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 ACAP3Q96P50 834 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 SPAG5Q96R06 1193 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 EIF2AQ9BY44 585 aaKnown RBP12.15□□□□□ -0.46
LINC00539-203ENST00000434601 TRIM6Q9C030 488 aaPredicted RBP12.15□□□□□ -0.46
LINC00539-203ENST00000434601 RAB20Q9NX57 234 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 AJAP1Q9UKB5 411 aaPredicted RBP12.15□□□□□ -0.46
LINC00539-203ENST00000434601 MTUS1Q9ULD2 1270 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 MYO6Q9UM54 1294 aa12.15□□□□□ -0.46
LINC00539-203ENST00000434601 ARIH1Q9Y4X5 557 aaPredicted RBP12.15□□□□□ -0.46
LINC00539-203ENST00000434601 CITO14578 2027 aa12.15□□□□□ -0.47
LINC00539-203ENST00000434601 SOWAHDA6NJG2 315 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 GPR182O15218 404 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 ZC3H11AO75152 810 aaKnown RBP eCLIP12.14□□□□□ -0.47
LINC00539-203ENST00000434601 HLA-DRAP01903 254 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 TMEM191BP0C7N4 346 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 GHRP10912 638 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 PLA2G5P39877 138 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 JAM2P57087 298 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 HTRA4P83105 476 aaPredicted RBP12.14□□□□□ -0.47
LINC00539-203ENST00000434601 RAPGEF1Q13905 1077 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 ASIC2Q16515 512 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 UBXN11Q5T124 520 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 SFMBT2Q5VUG0 894 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 E4F1Q66K89 784 aaPredicted RBP12.14□□□□□ -0.47
LINC00539-203ENST00000434601 TWF2Q6IBS0 349 aaKnown RBP12.14□□□□□ -0.47
LINC00539-203ENST00000434601 FAM117BQ6P1L5 589 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 GJB7Q6PEY0 223 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 WDR59Q6PJI9 974 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 KIAA1524Q8TCG1 905 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 SYN2Q92777 582 aaPredicted RBP12.14□□□□□ -0.47
LINC00539-203ENST00000434601 APBB2Q92870 758 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 ANKRD36BP1Q96IX9 119 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 NT5C1BQ96P26 610 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 MTMR12Q9C0I1 747 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 NXF3Q9H4D5 531 aaKnown RBP12.14□□□□□ -0.47
LINC00539-203ENST00000434601 ASB7Q9H672 318 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 ERVK-5Q9HDB9 667 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 DNAJC12Q9UKB3 198 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 ST3GAL5Q9UNP4 418 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 PLAGL2Q9UPG8 496 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 HCN4Q9Y3Q4 1203 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 SQORQ9Y6N5 450 aa12.14□□□□□ -0.47
LINC00539-203ENST00000434601 PDCD11Q14690 1871 aaKnown RBP12.14□□□□□ -0.47
LINC00539-203ENST00000434601 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.13□□□□□ -0.47
LINC00539-203ENST00000434601 LACTBL1A8MY62 500 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 F8VZ95 297 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 MEFVO15553 781 aaPredicted RBP12.13□□□□□ -0.47
LINC00539-203ENST00000434601 PHACTR2O75167 634 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 RECQL4O94761 1208 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 TNNC2P02585 160 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 NFICP08651 508 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 YARSP54577 528 aaKnown RBP12.13□□□□□ -0.47
LINC00539-203ENST00000434601 TFAMQ00059 246 aaKnown RBP12.13□□□□□ -0.47
LINC00539-203ENST00000434601 CDK17Q00537 523 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 PAK2Q13177 524 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 DUOXA2Q1HG44 320 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 TCTN1Q2MV58 587 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 SLC10A6Q3KNW5 377 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 PUS10Q3MIT2 529 aaKnown RBP12.13□□□□□ -0.47
LINC00539-203ENST00000434601 LEXMQ3ZCV2 418 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 TMEM31Q5JXX7 168 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 PHLDB3Q6NSJ2 640 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.13□□□□□ -0.47
LINC00539-203ENST00000434601 SPRED2Q7Z698 418 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 NT5DC4Q86YG4 428 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 ARHGEF19Q8IW93 802 aa12.13□□□□□ -0.47
LINC00539-203ENST00000434601 CD302Q8IX05 232 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms