RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 CKAP2Q8WWK9 683 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 GRAMD1AQ96CP6 724 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 SCLT1Q96NL6 688 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 PHACTR1Q9C0D0 580 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 JPH1Q9HDC5 661 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-207ENST00000433762 CHST7Q9NS84 486 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 NAMPTP43490 491 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 LIG4P49917 911 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 ZNF280AP59817 542 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-207ENST00000433762 STRN3Q13033 797 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 GRM1Q13255 1194 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 CUL2Q13617 745 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 RASA2Q15283 850 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 GNPTABQ3T906 1256 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 ABHD15Q6UXT9 468 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 PPP1R21Q6ZMI0 780 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 CPNE8Q86YQ8 564 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 REPS2Q8NFH8 660 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 ZNF516Q92618 1163 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 FAM212AQ96EL1 285 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 BICD1Q96G01 975 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 RBM41Q96IZ5 413 aaKnown RBP14.53□□□□□ -0.08
COL6A3-207ENST00000433762 TTC25Q96NG3 672 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 FAM213AQ9BRX8 229 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 KIFC3Q9BVG8 833 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 RPAP3Q9H6T3 665 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-207ENST00000433762 AS3MTQ9HBK9 375 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 MYOZ2Q9NPC6 264 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 UBN1Q9NPG3 1134 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 SLC9A2Q9UBY0 812 aa14.53□□□□□ -0.08
COL6A3-207ENST00000433762 CHORDC1Q9UHD1 332 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-207ENST00000433762 ZBTB12Q9Y330 459 aaPredicted RBP14.53□□□□□ -0.08
COL6A3-207ENST00000433762 DOCK5Q9H7D0 1870 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 SUN1O94901 812 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 GSCP56915 257 aaPredicted RBP14.52□□□□□ -0.08
COL6A3-207ENST00000433762 WLSQ5T9L3 541 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 MIS18BP1Q6P0N0 1132 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 VSTM1Q6UX27 236 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 ARHGEF18Q6ZSZ5 1173 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 ZNF365Q70YC5 407 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 ILDR2Q71H61 639 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 CCDC25Q86WR0 208 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 TDRPQ86YL5 185 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 CGRRF1Q99675 332 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 OSBPL8Q9BZF1 889 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 POLR3FQ9H1D9 316 aaPredicted RBP14.52□□□□□ -0.08
COL6A3-207ENST00000433762 HOMER2Q9NSB8 354 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 EURLQ9NYK6 297 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 NINJ2Q9NZG7 142 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 IP6K2Q9UHH9 426 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 USP15Q9Y4E8 981 aaPredicted RBP14.52□□□□□ -0.08
COL6A3-207ENST00000433762 PPME1Q9Y570 386 aa14.52□□□□□ -0.08
COL6A3-207ENST00000433762 TMEM120BA0PK00 339 aa14.52□□□□□ -0.09
COL6A3-207ENST00000433762 LSM8O95777 96 aaKnown RBP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 VIMP08670 466 aaKnown RBP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 RPS12P25398 132 aaKnown RBP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 RDXP35241 583 aaKnown RBP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 PIK3CAP42336 1068 aa14.52□□□□□ -0.09
COL6A3-207ENST00000433762 PRKCEQ02156 737 aa14.52□□□□□ -0.09
COL6A3-207ENST00000433762 TAP1Q03518 808 aa14.52□□□□□ -0.09
COL6A3-207ENST00000433762 BAATQ14032 418 aaPredicted RBP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 SPRED3Q2MJR0 410 aa14.52□□□□□ -0.09
COL6A3-207ENST00000433762 CRELD2Q6UXH1 353 aaPredicted RBP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 RCOR2Q8IZ40 523 aa14.52□□□□□ -0.09
COL6A3-207ENST00000433762 ZCCHC9Q8N567 271 aaKnown RBP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 DDX23Q9BUQ8 820 aaKnown RBP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 TMEM134Q9H6X4 195 aa14.52□□□□□ -0.09
COL6A3-207ENST00000433762 PARVAQ9NVD7 372 aa14.52□□□□□ -0.09
COL6A3-207ENST00000433762 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 AGO2Q9UKV8 859 aaKnown RBP14.52□□□□□ -0.09
COL6A3-207ENST00000433762 A0A1B0GUA9 196 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 SMIM23A6NLE4 172 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 SPATA31C2B4DYI2 1134 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 KLRC2P26717 231 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ADCY8P40145 1251 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 MAMLD1Q13495 774 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 PREPLQ4J6C6 727 aaPredicted RBP14.51□□□□□ -0.09
COL6A3-207ENST00000433762 TDRD10Q5VZ19 366 aaKnown RBP14.51□□□□□ -0.09
COL6A3-207ENST00000433762 HIBCHQ6NVY1 386 aaPredicted RBP14.51□□□□□ -0.09
COL6A3-207ENST00000433762 SH2D3AQ9BRG2 576 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ZNF277Q9NRM2 450 aaPredicted RBP14.51□□□□□ -0.09
COL6A3-207ENST00000433762 HAUS2Q9NVX0 235 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ADAM22Q9P0K1 906 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 DRG1Q9Y295 367 aaKnown RBP14.51□□□□□ -0.09
COL6A3-207ENST00000433762 LCTP09848 1927 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ATG7O95352 703 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 GJB6O95452 261 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 CLTAP09496 248 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 SUPT20HL2P0C7V6 817 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 RALAP11233 206 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 DPEP1P16444 411 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ICAM3P32942 547 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 CHKAP35790 457 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 SLCO1A2P46721 670 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ZNF132P52740 706 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 ACVR2BQ13705 512 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 EMC2Q15006 297 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 LONRF1Q17RB8 773 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 SUPT20HL1Q3ZLR7 823 aa14.51□□□□□ -0.09
COL6A3-207ENST00000433762 UBR7Q8N806 425 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms