RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 LARGE2Q8N3Y3 721 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 EXD1Q8NHP7 514 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 KCNN1Q92952 543 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 GRAMD1AQ96CP6 724 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 BICD1Q96G01 975 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 FNBP1Q96RU3 617 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 FAM213AQ9BRX8 229 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 KCNK9Q9NPC2 374 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 PDLIM7Q9NR12 457 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 HOMER2Q9NSB8 354 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 GABBR1Q9UBS5 961 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 ADGRA3Q8IWK6 1321 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 NDC80O14777 642 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 PSAPP07602 524 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 BRAFP15056 766 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 NR1H3Q13133 447 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 ZACNQ401N2 412 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 CRELD2Q6UXH1 353 aaPredicted RBP12.01□□□□□ -0.49
USP4-205ENST00000431357 VSIG10LQ86VR7 867 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 CDAN1Q8IWY9 1227 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 CPA5Q8WXQ8 436 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 ATG4AQ8WYN0 398 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 PI4K2AQ9BTU6 479 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 OSBPL8Q9BZF1 889 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 MTFR1LQ9H019 292 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 NKIRAS1Q9NYS0 192 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 ARHGAP28Q9P2N2 729 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 ARL2BPQ9Y2Y0 163 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 STBD1O95210 358 aa12□□□□□ -0.49
USP4-205ENST00000431357 ATP6V1G2O95670 118 aa12□□□□□ -0.49
USP4-205ENST00000431357 HLA-DRAP01903 254 aa12□□□□□ -0.49
USP4-205ENST00000431357 C4BPAP04003 597 aaKnown RBP12□□□□□ -0.49
USP4-205ENST00000431357 RALAP11233 206 aa12□□□□□ -0.49
USP4-205ENST00000431357 LIG4P49917 911 aa12□□□□□ -0.49
USP4-205ENST00000431357 SARNPP82979 210 aaKnown RBP12□□□□□ -0.49
USP4-205ENST00000431357 GALNTL6Q49A17 601 aa12□□□□□ -0.49
USP4-205ENST00000431357 NUGGCQ68CJ6 796 aa12□□□□□ -0.49
USP4-205ENST00000431357 TRMT1LQ7Z2T5 733 aaKnown RBP12□□□□□ -0.49
USP4-205ENST00000431357 FAM228AQ86W67 206 aa12□□□□□ -0.49
USP4-205ENST00000431357 PHF13Q86YI8 300 aaPredicted RBP12□□□□□ -0.49
USP4-205ENST00000431357 ANKRD35Q8N283 1001 aa12□□□□□ -0.49
USP4-205ENST00000431357 MGARPQ8TDB4 240 aa12□□□□□ -0.49
USP4-205ENST00000431357 ZNF516Q92618 1163 aa12□□□□□ -0.49
USP4-205ENST00000431357 ZBED3Q96IU2 234 aaPredicted RBP12□□□□□ -0.49
USP4-205ENST00000431357 MAGEB18Q96M61 343 aa12□□□□□ -0.49
USP4-205ENST00000431357 ATP6V0A4Q9HBG4 840 aa12□□□□□ -0.49
USP4-205ENST00000431357 ADAM22Q9P0K1 906 aa12□□□□□ -0.49
USP4-205ENST00000431357 STYXL1Q9Y6J8 313 aa12□□□□□ -0.49
USP4-205ENST00000431357 NFASCO94856 1347 aa12□□□□□ -0.49
USP4-205ENST00000431357 UMODL1Q5DID0 1318 aa12□□□□□ -0.49
USP4-205ENST00000431357 A0A1B0GUA9 196 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 GJB6O95452 261 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 LDHAP00338 332 aaKnown RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 STX2P32856 288 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 PIK3CAP42336 1068 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 C1QBPQ07021 282 aaKnown RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 STRN3Q13033 797 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 LRRC14Q15048 493 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 TRIP13Q15645 432 aaPredicted RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 IZUMO3Q5VZ72 239 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 PLEKHA7Q6IQ23 1121 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 CHADLQ6NUI6 762 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 SPATA21Q7Z572 469 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 ABRAQ8N0Z2 381 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 GIMAP7Q8NHV1 300 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 FAM212AQ96EL1 285 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 CDHR1Q96JP9 859 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 HERPUD2Q9BSE4 406 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 TRIM7Q9C029 511 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 NOD2Q9HC29 1040 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 FGFR1OP2Q9NVK5 253 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 ZNFX1Q9P2E3 1918 aaKnown RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 ANKRD33BA6NCL7 494 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 ZNF862O60290 1169 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 NR3C2P08235 984 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 TNNI1P19237 187 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 ACO1P21399 889 aaKnown RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 TBXAS1P24557 533 aaPredicted RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 NOMO3P69849 1222 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 CUL2Q13617 745 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 ZNF268Q14587 947 aaPredicted RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 LLGL1Q15334 1064 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 FAM133BQ5BKY9 247 aaKnown RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 SLFN12LQ6IEE8 588 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 DRICH1Q6PGQ1 229 aaPredicted RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 RCOR2Q8IZ40 523 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 ZCCHC9Q8N567 271 aaKnown RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 ANKRD42Q8N9B4 389 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 RBM41Q96IZ5 413 aaKnown RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 CFAP57Q96MR6 1250 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 TTC25Q96NG3 672 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 UBN1Q9NPG3 1134 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 CYP26B1Q9NR63 512 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 ABCF3Q9NUQ8 709 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 IP6K2Q9UHH9 426 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 MCM8Q9UJA3 840 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 NAALADL1Q9UQQ1 740 aa11.99□□□□□ -0.49
USP4-205ENST00000431357 R3HDM2Q9Y2K5 976 aaKnown RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 ZBTB12Q9Y330 459 aaPredicted RBP11.99□□□□□ -0.49
USP4-205ENST00000431357 CD2APQ9Y5K6 639 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms