RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 C9orf57Q5W0N0 161 aa13.45□□□□□ -0.26
USP40-205ENST00000430158 IRF2BP1Q8IU81 584 aa13.45□□□□□ -0.26
USP40-205ENST00000430158 C1orf127Q8N9H9 656 aa13.45□□□□□ -0.26
USP40-205ENST00000430158 POF1BQ8WVV4 589 aa13.45□□□□□ -0.26
USP40-205ENST00000430158 CEP63Q96MT8 703 aa13.45□□□□□ -0.26
USP40-205ENST00000430158 CGRRF1Q99675 332 aa13.45□□□□□ -0.26
USP40-205ENST00000430158 COLEC11Q9BWP8 271 aa13.45□□□□□ -0.26
USP40-205ENST00000430158 LMCD1Q9NZU5 365 aa13.45□□□□□ -0.26
USP40-205ENST00000430158 MTCH2Q9Y6C9 303 aa13.45□□□□□ -0.26
USP40-205ENST00000430158 LRRIQ3A6PVS8 624 aaPredicted RBP13.44□□□□□ -0.26
USP40-205ENST00000430158 CETN3O15182 167 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 SPTLC1O15269 473 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 ERCC5P28715 1186 aaPredicted RBP13.44□□□□□ -0.26
USP40-205ENST00000430158 IRS1P35568 1242 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 PSMC2P35998 433 aaKnown RBP13.44□□□□□ -0.26
USP40-205ENST00000430158 SURF1Q15526 300 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 CT47A1Q5JQC4 288 aaPredicted RBP13.44□□□□□ -0.26
USP40-205ENST00000430158 CEP135Q66GS9 1140 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 LMBRD2Q68DH5 695 aaPredicted RBP13.44□□□□□ -0.26
USP40-205ENST00000430158 C15orf39Q6ZRI6 1047 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 FILIP1Q7Z7B0 1213 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 WDR49Q8IV35 697 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 TSG101Q99816 390 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 LMAN2LQ9H0V9 348 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 CHST7Q9NS84 486 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 DPP3Q9NY33 737 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 ADAM28Q9UKQ2 775 aa13.44□□□□□ -0.26
USP40-205ENST00000430158 PRUNE2Q8WUY3 3088 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 BICDL2A1A5D9 508 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 SLC16A3O15427 465 aaKnown RBP13.43□□□□□ -0.26
USP40-205ENST00000430158 C4BPAP04003 597 aaKnown RBP13.43□□□□□ -0.26
USP40-205ENST00000430158 PSEN1P49768 467 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 MARSP56192 900 aaKnown RBP13.43□□□□□ -0.26
USP40-205ENST00000430158 DUOXA2Q1HG44 320 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 SKOR2Q2VWA4 1001 aaPredicted RBP13.43□□□□□ -0.26
USP40-205ENST00000430158 KIAA0319Q5VV43 1072 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 FUT10Q6P4F1 479 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 C11orf57Q6ZUT1 292 aaPredicted RBP13.43□□□□□ -0.26
USP40-205ENST00000430158 FAM186BQ8IYM0 893 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 BEST2Q8NFU1 509 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 NOC3LQ8WTT2 800 aaKnown RBP13.43□□□□□ -0.26
USP40-205ENST00000430158 MYLIPQ8WY64 445 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 CCDC127Q96BQ5 260 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 MRPL38Q96DV4 380 aaKnown RBP13.43□□□□□ -0.26
USP40-205ENST00000430158 TMEM169Q96HH4 297 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 HERC2P3Q9BVR0 1158 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 MTMR12Q9C0I1 747 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 ZBP1Q9H171 429 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 FRMD4BQ9Y2L6 1034 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 PCDHGC5Q9Y5F6 944 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 IRAK3Q9Y616 596 aa13.43□□□□□ -0.26
USP40-205ENST00000430158 M0QZQ0 153 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 IKBKBO14920 756 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 XPOTO43592 962 aaKnown RBP13.42□□□□□ -0.26
USP40-205ENST00000430158 B3GAT3O94766 335 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 VNN1O95497 513 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 SOD2P04179 222 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 DLATP10515 647 aaKnown RBP13.42□□□□□ -0.26
USP40-205ENST00000430158 CTSAP10619 480 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 FGFR3P22607 806 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 BRCC3P46736 316 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 VAMP7P51809 220 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 LILRA4P59901 499 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 TFAMQ00059 246 aaKnown RBP13.42□□□□□ -0.26
USP40-205ENST00000430158 KRT17Q04695 432 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 TYRO3Q06418 890 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 PPP3CAQ08209 521 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 BFSP1Q12934 665 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 ZACNQ401N2 412 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 TIGD5Q53EQ6 642 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 INTS8Q75QN2 995 aaKnown RBP13.42□□□□□ -0.26
USP40-205ENST00000430158 TRAPPC11Q7Z392 1133 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 LIMS2Q7Z4I7 341 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 GPR65Q8IYL9 337 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 VPS52Q8N1B4 723 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 CSGALNACT2Q8N6G5 542 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 HASPINQ8TF76 798 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 CACTINQ8WUQ7 758 aaKnown RBP13.42□□□□□ -0.26
USP40-205ENST00000430158 SUSD3Q96L08 255 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 SRRTQ9BXP5 876 aaKnown RBP13.42□□□□□ -0.26
USP40-205ENST00000430158 ITGA11Q9UKX5 1188 aa13.42□□□□□ -0.26
USP40-205ENST00000430158 TSC2P49815 1807 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 COL6A3P12111 3177 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 MTCL1Q9Y4B5 1905 aaKnown RBP13.41□□□□□ -0.26
USP40-205ENST00000430158 I3L4J1 428 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 TADA2AO75478 443 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 CST3P01034 146 aaPredicted RBP13.41□□□□□ -0.26
USP40-205ENST00000430158 TRIM49P0CI25 452 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 TRIM49CP0CI26 452 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 DSG1Q02413 1049 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 MRPL58Q14197 206 aaKnown RBP13.41□□□□□ -0.26
USP40-205ENST00000430158 COL19A1Q14993 1142 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 RTP2Q5QGT7 225 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 TDRD10Q5VZ19 366 aaKnown RBP13.41□□□□□ -0.26
USP40-205ENST00000430158 SV2AQ7L0J3 742 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 FRMD5Q7Z6J6 570 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 MRPL43Q8N983 215 aaKnown RBP13.41□□□□□ -0.26
USP40-205ENST00000430158 SLC35C1Q96A29 364 aa13.41□□□□□ -0.26
USP40-205ENST00000430158 SYAP1Q96A49 352 aaPredicted RBP13.41□□□□□ -0.26
USP40-205ENST00000430158 B3GALT6Q96L58 329 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms