RNA–Protein interactions for RNA: ENST00000418628.5

PTCD3-204, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 532 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-204ENST00000418628 MICAL1Q8TDZ2 1067 aa20.19■□□□□ 0.82
PTCD3-204ENST00000418628 FAM84AQ96KN4 292 aa20.19■□□□□ 0.82
PTCD3-204ENST00000418628 B3GALT6Q96L58 329 aa20.19■□□□□ 0.82
PTCD3-204ENST00000418628 TTPALQ9BTX7 342 aa20.19■□□□□ 0.82
PTCD3-204ENST00000418628 UBE2ZQ9H832 354 aaPredicted RBP20.19■□□□□ 0.82
PTCD3-204ENST00000418628 MRPL17Q9NRX2 175 aaKnown RBP20.19■□□□□ 0.82
PTCD3-204ENST00000418628 INTS13Q9NVM9 706 aa20.19■□□□□ 0.82
PTCD3-204ENST00000418628 COG5Q9UP83 839 aa20.19■□□□□ 0.82
PTCD3-204ENST00000418628 DENND4CQ5VZ89 1909 aa20.19■□□□□ 0.82
PTCD3-204ENST00000418628 SYN3O14994 580 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 LINC01565O15544 149 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 EXOC3O60645 756 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 CLASP2O75122 1294 aaKnown RBP20.18■□□□□ 0.82
PTCD3-204ENST00000418628 CXCL14O95715 111 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 CASP4P49662 377 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 FAM171A1Q5VUB5 890 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 FOXR2Q6PJQ5 311 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 WDR49Q8IV35 697 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 C1orf127Q8N9H9 656 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 KLHL5Q96PQ7 755 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 CGRRF1Q99675 332 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 TLE6Q9H808 572 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 DPP3Q9NY33 737 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 FNIP2Q9P278 1114 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 SSX2IPQ9Y2D8 614 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 C5orf42Q9H799 3197 aa20.18■□□□□ 0.82
PTCD3-204ENST00000418628 GREB1Q4ZG55 1949 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 PPP1R3GB7ZBB8 358 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 I3L4J1 428 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 PER2O15055 1255 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 CNPP09543 421 aaKnown RBP20.17■□□□□ 0.82
PTCD3-204ENST00000418628 NR2F2P24468 414 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 TKTP29401 623 aaKnown RBP20.17■□□□□ 0.82
PTCD3-204ENST00000418628 PMS1P54277 932 aaKnown RBP20.17■□□□□ 0.82
PTCD3-204ENST00000418628 BMS1Q14692 1282 aaKnown RBP20.17■□□□□ 0.82
PTCD3-204ENST00000418628 CAMK4Q16566 473 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 RBM23Q86U06 439 aaKnown RBP20.17■□□□□ 0.82
PTCD3-204ENST00000418628 OR5B17Q8NGF7 314 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 LNX1Q8TBB1 728 aaPredicted RBP20.17■□□□□ 0.82
PTCD3-204ENST00000418628 SLC22A17Q8WUG5 538 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 MTMR12Q9C0I1 747 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.17■□□□□ 0.82
PTCD3-204ENST00000418628 THEGQ9P2T0 379 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 SIX4Q9UIU6 781 aa20.17■□□□□ 0.82
PTCD3-204ENST00000418628 GOLGA6L22H0YM25 854 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 SPTLC1O15269 473 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 TEX28O15482 410 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 TRAPPC3O43617 180 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 C1RP00736 705 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 PAX3P23760 479 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 PPP1R2P41236 205 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 LILRA4P59901 499 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 CREMQ03060 361 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 ENPEPQ07075 957 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 DLX2Q07687 328 aaPredicted RBP20.16■□□□□ 0.82
PTCD3-204ENST00000418628 MRPL58Q14197 206 aaKnown RBP20.16■□□□□ 0.82
PTCD3-204ENST00000418628 SCARA3Q6AZY7 606 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 RBM43Q6ZSC3 357 aaKnown RBP20.16■□□□□ 0.82
PTCD3-204ENST00000418628 RDH13Q8NBN7 331 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 PARD3BQ8TEW8 1205 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 RIN2Q8WYP3 895 aaPredicted RBP20.16■□□□□ 0.82
PTCD3-204ENST00000418628 HLA-CQ95604 372 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 BORCS6Q96GS4 357 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 MSLNLQ96KJ4 702 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 NUP62CLQ9H1M0 184 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 CLEC1BQ9P126 229 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 MTRRQ9UBK8 725 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 ITGA11Q9UKX5 1188 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 HCFC2Q9Y5Z7 792 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 OBSL1O75147 1896 aa20.16■□□□□ 0.82
PTCD3-204ENST00000418628 TTC28Q96AY4 2481 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 TBC1D4O60343 1298 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 AKAP3O75969 853 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 CCNE1P24864 410 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 MCM4P33991 863 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 CLCN4P51793 760 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 RBM10P98175 930 aaKnown RBP20.15■□□□□ 0.82
PTCD3-204ENST00000418628 TFAMQ00059 246 aaKnown RBP20.15■□□□□ 0.82
PTCD3-204ENST00000418628 LRRC63Q05C16 580 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 PSMD5Q16401 504 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 LMBRD2Q68DH5 695 aaPredicted RBP20.15■□□□□ 0.82
PTCD3-204ENST00000418628 PDXDC1Q6P996 788 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 PRSS55Q6UWB4 352 aaPredicted RBP20.15■□□□□ 0.82
PTCD3-204ENST00000418628 NOC3LQ8WTT2 800 aaKnown RBP20.15■□□□□ 0.82
PTCD3-204ENST00000418628 CACTINQ8WUQ7 758 aaKnown RBP20.15■□□□□ 0.82
PTCD3-204ENST00000418628 DHTKD1Q96HY7 919 aaPredicted RBP20.15■□□□□ 0.82
PTCD3-204ENST00000418628 CLSTN3Q9BQT9 956 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 MKNK1Q9BUB5 465 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 EMILIN2Q9BXX0 1053 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 CLDND1Q9NY35 253 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 PCDHB8Q9UN66 801 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 NUB1Q9Y5A7 615 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 MYH10P35580 1976 aa20.15■□□□□ 0.82
PTCD3-204ENST00000418628 TRIM49BA6NDI0 452 aa20.14■□□□□ 0.81
PTCD3-204ENST00000418628 LRRIQ3A6PVS8 624 aaPredicted RBP20.14■□□□□ 0.81
PTCD3-204ENST00000418628 BIN1O00499 593 aa20.14■□□□□ 0.81
PTCD3-204ENST00000418628 C2CD2LO14523 706 aa20.14■□□□□ 0.81
PTCD3-204ENST00000418628 PAPLNO95428 1278 aa20.14■□□□□ 0.81
PTCD3-204ENST00000418628 ITGB3P05106 788 aa20.14■□□□□ 0.81
PTCD3-204ENST00000418628 NDUFV1P49821 464 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms