RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 ZNF467Q7Z7K2 595 aaPredicted RBP21.5■■□□□ 1.03
USP39-204ENST00000409766 PPTC7Q8NI37 304 aa21.5■■□□□ 1.03
USP39-204ENST00000409766 FAM212AQ96EL1 285 aa21.5■■□□□ 1.03
USP39-204ENST00000409766 ANAPC7Q9UJX3 599 aa21.5■■□□□ 1.03
USP39-204ENST00000409766 MAPK4P31152 587 aa21.49■■□□□ 1.03
USP39-204ENST00000409766 GCLCP48506 637 aaPredicted RBP21.49■■□□□ 1.03
USP39-204ENST00000409766 MYL6P60660 151 aa21.49■■□□□ 1.03
USP39-204ENST00000409766 NOMO3P69849 1222 aa21.49■■□□□ 1.03
USP39-204ENST00000409766 MKRN3Q13064 507 aaKnown RBP21.49■■□□□ 1.03
USP39-204ENST00000409766 ZNF568Q3ZCX4 644 aa21.49■■□□□ 1.03
USP39-204ENST00000409766 EEF1DP3Q658K8 133 aa21.49■■□□□ 1.03
USP39-204ENST00000409766 EMID1Q96A84 441 aaPredicted RBP21.49■■□□□ 1.03
USP39-204ENST00000409766 IFT122Q9HBG6 1241 aa21.49■■□□□ 1.03
USP39-204ENST00000409766 ZSWIM8A7E2V4 1837 aa21.49■■□□□ 1.03
USP39-204ENST00000409766 DAPK3O43293 454 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 IGBP1P78318 339 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 POU5F1BQ06416 359 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 SEL1L2Q5TEA6 688 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 ANKRD23Q86SG2 305 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 THNSL1Q8IYQ7 743 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 ZDHHC14Q8IZN3 488 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 ZIM3Q96PE6 472 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.48■■□□□ 1.03
USP39-204ENST00000409766 TNFSF13BQ9Y275 285 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 UTP11Q9Y3A2 253 aaKnown RBP21.48■■□□□ 1.03
USP39-204ENST00000409766 B4GALT4O60513 344 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 HSPA9P38646 679 aaKnown RBP21.48■■□□□ 1.03
USP39-204ENST00000409766 DR1Q01658 176 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 SGSM1Q2NKQ1 1148 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 LINC01465Q8N7H1 131 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 PRELID2Q8N945 189 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 AFG1LQ8WV93 481 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 PIK3R5Q8WYR1 880 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 VCPIP1Q96JH7 1222 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 TRIM7Q9C029 511 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 NEUROG2Q9H2A3 272 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.48■■□□□ 1.03
USP39-204ENST00000409766 IVNS1ABPQ9Y6Y0 642 aa21.48■■□□□ 1.03
USP39-204ENST00000409766 OPA1O60313 960 aa21.47■■□□□ 1.03
USP39-204ENST00000409766 SNAI1O95863 264 aaPredicted RBP21.47■■□□□ 1.03
USP39-204ENST00000409766 ADCYAP1R1P41586 468 aa21.47■■□□□ 1.03
USP39-204ENST00000409766 RWDD2BP57060 319 aa21.47■■□□□ 1.03
USP39-204ENST00000409766 KCTD19Q17RG1 926 aaPredicted RBP21.47■■□□□ 1.03
USP39-204ENST00000409766 C2CD6Q53TS8 623 aa21.47■■□□□ 1.03
USP39-204ENST00000409766 CDR2LQ86X02 465 aaPredicted RBP21.47■■□□□ 1.03
USP39-204ENST00000409766 PHF13Q86YI8 300 aaPredicted RBP21.47■■□□□ 1.03
USP39-204ENST00000409766 PASD1Q8IV76 773 aa21.47■■□□□ 1.03
USP39-204ENST00000409766 EFCAB13Q8IY85 973 aa21.47■■□□□ 1.03
USP39-204ENST00000409766 CEP120Q8N960 986 aa21.47■■□□□ 1.03
USP39-204ENST00000409766 CDT1Q9H211 546 aa21.47■■□□□ 1.03
USP39-204ENST00000409766 THAP12O43422 761 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 PHF2O75151 1096 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 TFAMQ00059 246 aaKnown RBP21.46■■□□□ 1.03
USP39-204ENST00000409766 DHX34Q14147 1143 aaKnown RBP21.46■■□□□ 1.03
USP39-204ENST00000409766 LLGL2Q6P1M3 1020 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 ZNF606Q8WXB4 792 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 TRIM51Q9BSJ1 452 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 C16orf70Q9BSU1 422 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 NIF3L1Q9GZT8 377 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 RAB17Q9H0T7 212 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 FAM114A2Q9NRY5 505 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 PRMT7Q9NVM4 692 aaPredicted RBP21.46■■□□□ 1.03
USP39-204ENST00000409766 MAGEB2O15479 319 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 OSTNP61366 133 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 PTP4A2Q12974 167 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 FAM187BQ17R55 369 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 CFAP58Q5T655 872 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 PHLDB2Q86SQ0 1253 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 SLC13A5Q86YT5 568 aaPredicted RBP21.46■■□□□ 1.03
USP39-204ENST00000409766 IFNLR1Q8IU57 520 aaPredicted RBP21.46■■□□□ 1.03
USP39-204ENST00000409766 RUFY1Q96T51 708 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 XYLT2Q9H1B5 865 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 ADAM22Q9P0K1 906 aa21.46■■□□□ 1.03
USP39-204ENST00000409766 FAM187AA6NFU0 413 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 GOLGA8KD6RF30 607 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 MYO1FO00160 1098 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 TMEM191BP0C7N4 346 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 ZNF286BP0CG31 522 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 CHRNA3P32297 505 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 SSTR3P32745 418 aaPredicted RBP21.45■■□□□ 1.02
USP39-204ENST00000409766 SLC1A1P43005 524 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 PHKA2P46019 1235 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 TRPC3Q13507 836 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 TMEM132AQ24JP5 1023 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 LIN9Q5TKA1 542 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 DUPD1Q68J44 220 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 PPP1R2P3Q6NXS1 205 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 GPR142Q7Z601 462 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 C18orf8Q96DM3 657 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 C11orf70Q9BRQ4 267 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 ERP44Q9BS26 406 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 CISHQ9NSE2 258 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.45■■□□□ 1.02
USP39-204ENST00000409766 TCRBV7S2A1N4TA0A589 114 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 PPFIA4O75335 1185 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 LMAN1P49257 510 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 FKBP1BP68106 108 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 AMHR2Q16671 573 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 CYP1B1Q16678 543 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 TMEM192Q8IY95 271 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms