RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 TCF25Q9BQ70 676 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 PLVAPQ9BX97 442 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 HAPLN2Q9GZV7 340 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 PDZD7Q9H5P4 517 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 TBC1D7Q9P0N9 293 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 MUTYHQ9UIF7 546 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 TRAF3IP3Q9Y228 551 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 HES2Q9Y543 173 aa10.03□□□□□ -0.8
VPS53-203ENST00000401468 A0A0U1RQF3 1178 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 J3QL48 77 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 N4BP3O15049 544 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 INPPL1O15357 1258 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 GPR37L1O60883 481 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 TOM1L1O75674 476 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 ERLIN2O94905 339 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 PRPF6O94906 941 aaKnown RBP10.02□□□□□ -0.81
VPS53-203ENST00000401468 KIF20AO95235 890 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 GARTP22102 1010 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 BCAR1P56945 870 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 NLRP12P59046 1061 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 SKOR1P84550 965 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 POU5F1Q01860 360 aaKnown RBP10.02□□□□□ -0.81
VPS53-203ENST00000401468 STRN3Q13033 797 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 MYBPC2Q14324 1141 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 COL19A1Q14993 1142 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 ATF7IP2Q5U623 682 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 SLC27A1Q6PCB7 646 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 MPZL3Q6UWV2 235 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 MRPL10Q7Z7H8 261 aaKnown RBP10.02□□□□□ -0.81
VPS53-203ENST00000401468 ZNF280BQ86YH2 543 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 SLC9A9Q8IVB4 645 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 SMYD4Q8IYR2 804 aaPredicted RBP10.02□□□□□ -0.81
VPS53-203ENST00000401468 C12orf76Q8N812 135 aaPredicted RBP10.02□□□□□ -0.81
VPS53-203ENST00000401468 MLKLQ8NB16 471 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 GOLGA5Q8TBA6 731 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 DHTKD1Q96HY7 919 aaPredicted RBP10.02□□□□□ -0.81
VPS53-203ENST00000401468 RPGRIP1Q96KN7 1286 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 ZNF558Q96NG5 402 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 MED15Q96RN5 788 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 TARS2Q9BW92 718 aaKnown RBP10.02□□□□□ -0.81
VPS53-203ENST00000401468 EIF2AQ9BY44 585 aaKnown RBP10.02□□□□□ -0.81
VPS53-203ENST00000401468 TMEM117Q9H0C3 514 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 LMAN2LQ9H0V9 348 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 DMAC2Q9NW81 257 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 EXOC7Q9UPT5 735 aa10.02□□□□□ -0.81
VPS53-203ENST00000401468 USP15Q9Y4E8 981 aaPredicted RBP10.02□□□□□ -0.81
VPS53-203ENST00000401468 ZDBF2Q9HCK1 2354 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 NOTCH4Q99466 2003 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 ANKRD63C9JTQ0 380 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 HNRNPDLO14979 420 aaKnown RBP10.01□□□□□ -0.81
VPS53-203ENST00000401468 KIAA0391O15091 583 aaKnown RBP10.01□□□□□ -0.81
VPS53-203ENST00000401468 POMCP01189 267 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 ADRB2P07550 413 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 MCF2P10911 925 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 LAG3P18627 525 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 SMCPP49901 116 aaPredicted RBP10.01□□□□□ -0.81
VPS53-203ENST00000401468 NCBP1Q09161 790 aaKnown RBP10.01□□□□□ -0.81
VPS53-203ENST00000401468 EDRF1Q3B7T1 1238 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 DPCR1Q3MIW9 517 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 ZSCAN23Q3MJ62 389 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 DCAF4L1Q3SXM0 396 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 EEF1DP3Q658K8 133 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 TMC7Q7Z402 723 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 LRRC43Q8N309 656 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 EFHBQ8N7U6 833 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 MSLNLQ96KJ4 702 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 FBXL18Q96ME1 805 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 VN1R3Q9BXE9 311 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 CXCL16Q9H2A7 254 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 IKZF4Q9H2S9 585 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 ELAC1Q9H777 363 aaKnown RBP10.01□□□□□ -0.81
VPS53-203ENST00000401468 NRDE2Q9H7Z3 1164 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 AGPAT3Q9NRZ7 376 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 FAM105AQ9NUU6 356 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 TBC1D13Q9NVG8 400 aa10.01□□□□□ -0.81
VPS53-203ENST00000401468 BIN1O00499 593 aa10□□□□□ -0.81
VPS53-203ENST00000401468 C2CD2LO14523 706 aa10□□□□□ -0.81
VPS53-203ENST00000401468 FSCN2O14926 492 aa10□□□□□ -0.81
VPS53-203ENST00000401468 DDHD2O94830 711 aa10□□□□□ -0.81
VPS53-203ENST00000401468 SKIP12755 728 aa10□□□□□ -0.81
VPS53-203ENST00000401468 CCNE1P24864 410 aa10□□□□□ -0.81
VPS53-203ENST00000401468 ERCC5P28715 1186 aaPredicted RBP10□□□□□ -0.81
VPS53-203ENST00000401468 SLC11A1P49279 550 aa10□□□□□ -0.81
VPS53-203ENST00000401468 LIG4P49917 911 aa10□□□□□ -0.81
VPS53-203ENST00000401468 RAB27AP51159 221 aa10□□□□□ -0.81
VPS53-203ENST00000401468 PMS1P54277 932 aaKnown RBP10□□□□□ -0.81
VPS53-203ENST00000401468 FOXK2Q01167 660 aa10□□□□□ -0.81
VPS53-203ENST00000401468 NHLH1Q02575 133 aa10□□□□□ -0.81
VPS53-203ENST00000401468 RNASELQ05823 741 aaKnown RBP10□□□□□ -0.81
VPS53-203ENST00000401468 LRRC63Q05C16 580 aa10□□□□□ -0.81
VPS53-203ENST00000401468 TYRO3Q06418 890 aa10□□□□□ -0.81
VPS53-203ENST00000401468 SMAD4Q13485 552 aaKnown RBP10□□□□□ -0.81
VPS53-203ENST00000401468 NOLC1Q14978 699 aaKnown RBP eCLIP10□□□□□ -0.81
VPS53-203ENST00000401468 SMAD2Q15796 467 aaKnown RBP10□□□□□ -0.81
VPS53-203ENST00000401468 STX1AQ16623 288 aa10□□□□□ -0.81
VPS53-203ENST00000401468 KYAT1Q16773 422 aa10□□□□□ -0.81
VPS53-203ENST00000401468 DUSP6Q16828 381 aa10□□□□□ -0.81
VPS53-203ENST00000401468 SLFN12LQ6IEE8 588 aa10□□□□□ -0.81
VPS53-203ENST00000401468 TTI2Q6NXR4 508 aa10□□□□□ -0.81
VPS53-203ENST00000401468 AGMOQ6ZNB7 445 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms