RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 CEP19Q96LK0 163 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 METTL5Q9NRN9 209 aaKnown RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 CCDC188H7C350 402 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 PDXKO00764 312 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 BEND6Q5SZJ8 279 aaPredicted RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 ARMC6Q6NXE6 501 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 SYT2Q8N9I0 419 aaPredicted RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 ABHD8Q96I13 439 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 IGFLR1Q9H665 355 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 FAF1Q9UNN5 650 aaPredicted RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 IL18RAPO95256 599 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 STAG3L1P0CL83 205 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 BRD2P25440 801 aaKnown RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 EPC2Q52LR7 807 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 IZUMO3Q5VZ72 239 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 SLITRK1Q96PX8 696 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 TUBE1Q9UJT0 475 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 A0A087WUV0 522 aaPredicted RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 CTIFO43310 598 aaKnown RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 PYGLP06737 847 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 CASP8Q14790 479 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 NCAPHQ15003 741 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 RASIP1Q5U651 963 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 ITSN1Q15811 1721 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 NBPF12Q5TAG4 269 aaPredicted RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 SNX31Q8N9S9 440 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 ARL8AQ96BM9 186 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 TIPINQ9BVW5 301 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 CCDC151A5D8V7 595 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 ARIH2O95376 493 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 EFTUD2Q15029 972 aaKnown RBP eCLIP11.94□□□□□ -0.5
TTC28-201ENST00000397906 ACER1Q8TDN7 264 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 ACSF2Q96CM8 615 aaPredicted RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 MED14O60244 1454 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 B3GAT3O94766 335 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 PDCLQ13371 301 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 PKN3Q6P5Z2 889 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 IGDCC4Q8TDY8 1250 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 SLC16A10Q8TF71 515 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 BTBD6Q96KE9 485 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 ADGRA2Q96PE1 1338 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 RRN3P2A6NIE6 340 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 CSDE1O75534 798 aaKnown RBP11.94□□□□□ -0.5
TTC28-201ENST00000397906 GTF2H1P32780 548 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 FMO5P49326 533 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 PTPRN2Q92932 1015 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 PKP3Q9Y446 797 aa11.94□□□□□ -0.5
TTC28-201ENST00000397906 ASAP2O43150 1006 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 MAD2L2Q9UI95 211 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 IGSF9BQ9UPX0 1349 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 CD163L1Q9NR16 1453 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 C3orf70A6NLC5 250 aaPredicted RBP11.93□□□□□ -0.5
TTC28-201ENST00000397906 ZRANB3Q5FWF4 1079 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 ERO1BQ86YB8 467 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 IPMKQ8NFU5 416 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.93□□□□□ -0.55e-6■■■□□ 16
TTC28-201ENST00000397906 GPR63Q9BZJ6 419 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 CD274Q9NZQ7 290 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 UNC13BO14795 1591 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 NDUFS3O75489 264 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 HIST1H2AGP0C0S8 130 aaPredicted RBP11.93□□□□□ -0.5
TTC28-201ENST00000397906 HIST1H2ADP20671 130 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 CLCN3P51790 818 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 MDM2Q00987 491 aaPredicted RBP11.93□□□□□ -0.5
TTC28-201ENST00000397906 LRRC14Q15048 493 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 MIB1Q86YT6 1006 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 HIST1H2AHQ96KK5 128 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 HIST1H2AJQ99878 128 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 H2AFJQ9BTM1 129 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 TEX12Q9BXU0 123 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 FBXO2Q9UK22 296 aaPredicted RBP11.93□□□□□ -0.5
TTC28-201ENST00000397906 PCDHGB4Q9UN71 923 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 TRIM33Q9UPN9 1127 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 SLC30A1Q9Y6M5 507 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 ITIH6Q6UXX5 1313 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 RFX7Q2KHR2 1363 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 MAP3K13O43283 966 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 BACE1P56817 501 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 HMOX2P30519 316 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 FSCBQ5H9T9 825 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 INTS5Q6P9B9 1019 aaKnown RBP11.93□□□□□ -0.5
TTC28-201ENST00000397906 CCDC33Q8N5R6 958 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 TARS2Q9BW92 718 aaKnown RBP11.93□□□□□ -0.5
TTC28-201ENST00000397906 DPP3Q9NY33 737 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 TAF6P49848 677 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 LRRC74AQ0VAA2 488 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 PDIA5Q14554 519 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 SBK1Q52WX2 424 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 NUDCD3Q8IVD9 361 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 TRIM48Q8IWZ4 208 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 SLC35G2Q8TBE7 412 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 ADM5C9JUS6 153 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 ICAM1P05362 532 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 TAL1P17542 331 aaPredicted RBP11.93□□□□□ -0.5
TTC28-201ENST00000397906 WASHC5Q12768 1159 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 HIF1AQ16665 826 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 TRIM9Q9C026 710 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 AGRPO00253 132 aa11.93□□□□□ -0.5
TTC28-201ENST00000397906 SPTLC1O15269 473 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms